Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3540 ATGGATAAAGGGCAGGTTTCAAGTAAGGGTAGTATTGGTGGTTGTTGGAAGATGAGTAGAAGTAGAAGCAGAAGCAGGTGTTGGTTAGTTGGGATCTTGATRTTGGTAGTGAGAGTGTTGGGAGGAAATGGGTACCCATCTGAGGATCTGGTGGTCAACCTTCCTGGACAACCCAAAGTTGACTTCAACCAATATGCTGGCTATGTTGATATTGATTCCAACCATGGAAGAAGCCTCTTCTACTATTTTGTTGAAGCTGCTTTTCATCCTCACAATAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCAGGGTGTTCTTCCATTGGAGGAGGTGCATTTACTGAATTGGGACCCTTTTTTCCTAAAGGAGATGGACGTGGTCTAAGAAGAAATTCTAAGTCATGGAACAAAGCATCCAACCTTCTGTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCAGATTATAATGCTGGGGATGCGTCCACCGCCAATGATATGTATTTGTTCATGCTGAAATGGTACGAGAAGTTCCCATCATACAGATCAAGAGAGCTGTTCCTCACAGGAGAAAGCTATGCAGGACACTACATACCACAGTTAACTAATGCTCTACTGGATCATAATGCTCGTTCYACTGGTTTCAAATTCAACATTAAAGGGGTTGCTATTGGAAACCCACTTCTAAGACTTGATCGCGATATACCAGCAACATACGAATACTTTTGGTCCCATGGAATGATTTCTGATGAAGTTGGACTTGCTATTATGAATGATTGCGACTTCGATGATTATGTGTACGAAAATCCTCACAATATTTCTCATTCATGCACCAACGCCATACGCGAAGCGAATAGTATAGTGGGAGATTATATAAATAACTATGATGTGATTCTTGATGTTTGTTATCCATCCATTGTGGAACAAGAGTTGAGATTGAAAAAAATGGCTACGAAAATAAGTGTAGGTGTTGATGTCTGTATGAGTTTCGAAAGGCGATTTTACTTCAACCTTCCTGAGGTTCAGAAGGCCCTCCATGCYAATCGCACCAAACTTCCTTATAGCTGGTCCATGTGTAGTCAAGTTCTAAACTATAGCGAAACTGATGGTAACATCAACATCCTTCCAATTCTCAAAAGGATAGTTCAAAACCATATCCCAATATGGATTTTCAGTGGCGACCAAGATTCGGTTGTGCCGTTGTTGGGATCTCGAATGCTAATTCGTGAGCTAGCTCACGAATTACACKTGAAGGTTACAGTTCCTTATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTGACAGAATATGGGAATTRGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTTCCTTACTCACAACCTTCAAGAGCATTGCWTTTATTCACTTCATTTCTGCGTGCTACCAGGTTGCCAAATACAACGGGTCCTTCCATTCTTCATTAA 1476 0.4194 MDKGQVSSKGSIGGCWKMSRSRSRSRCWLVGILXLVVRVLGGNGYPSEDLVVNLPGQPKVDFNQYAGYVDIDSNHGRSLFYYFVEAAFHPHNKPLTLWLNGGPGCSSIGGGAFTELGPFFPKGDGRGLRRNSKSWNKASNLLFVESPAGVGWSYSNTTSDYNAGDASTANDMYLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLTNALLDHNARSTGFKFNIKGVAIGNPLLRLDRDIPATYEYFWSHGMISDEVGLAIMNDCDFDDYVYENPHNISHSCTNAIREANSIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMSFERRFYFNLPEVQKALHANRTKLPYSWSMCSQVLNYSETDGNINILPILKRIVQNHIPIWIFSGDQDSVVPLLGSRMLIRELAHELHXKVTVPYGAWFHKGQVGGWVTEYGNXLTFATVRGAAHMVPYSQPSRALXLFTSFLRATRLPNTTGPSILH* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3540 491 Gene3D - 332 368 - -
Amo16g3540 491 ProSitePatterns Serine carboxypeptidases, serine active site. 193 200 IPR018202 GO:0004185
Amo16g3540 491 Gene3D alpha/beta hydrolase 46 308 IPR029058 -
Amo16g3540 491 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 485 IPR001563 GO:0004185|GO:0006508
Amo16g3540 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
Amo16g3540 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 179 204 IPR001563 GO:0004185|GO:0006508
Amo16g3540 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Amo16g3540 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Amo16g3540 491 PANTHER CARBOXYPEPTIDASE 37 485 - -
Amo16g3540 491 Pfam Serine carboxypeptidase 56 477 IPR001563 GO:0004185|GO:0006508
Amo16g3540 491 SUPERFAMILY alpha/beta-Hydrolases 47 479 IPR029058 -
Amo16g3540 491 Gene3D - 379 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3540 Amo-Chr16 145396231 145401701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3540 338 481 Calmodulin-binding Proteins AT2G22960 25.000 2.07e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3540 K16297 - gmx:100801752 837.795