Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0643 . . . . Aev07g1328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0644 . . . . . . . . . . . Apr9g0012 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac1g00864 Phco2g00726 . Psa6g0844 . . . . Spst8g01806 . . . . . . . Vimu1g02450 . . Vra6g1463
Pvu1g0645 . . . . . . . . . . . Apr9g0004 . . . . Car04g03059 . . . . . . . . . . . . . . . . Lasa6g00749 . . . . . Mal1g5314 Mepo4g00825 Mesa1g00854 . Mtr1g0074 . Phco2g00727 . . . . . . Spst8g01805 . . Tpr1g3235 . Tsu01g00841 . . . . . Vra6g1462
Pvu1g0646 . . . . . . . . . . . . . . . . Car04g03032 . . . . . . . . . . Lal25g1113 Lal10g0072 . Lan6g1731 . . Lasa6g00783 . . . . Lja1g5701 Mal1g5274 Mepo4g00855 Mesa1g00897 . Mtr1g0038 . Phco2g00728 . . . . . . Spst8g01804 . . Tpr1g3208 Trre1g00916 Tsu01g00870 . . Vimu1g02441 . . .
Pvu1g0647 . . . . . . . . . . . . Arst6g03442 . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g5272 Mepo4g00860 Mesa1g00899 . Mtr1g0035 . . . . . . . . . . . Tpr1g3206 Trre1g00918 Tsu01g00872 . . Vimu1g02439 . . .
Pvu1g0648 . . . . . . . Aip06g03167 . . . . Arst6g03441 . . . Car04g03030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00729 . . . . . . Spst8g01802 . . . . . . . Vimu1g02437 . . .
Pvu1g0649 . . Adu06g02686 . Aev07g1612 . . . . . . . . . Bisa05g1252 . . . Dere05g2196 . . Glsi10g0891 . . Gso14g1146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0669 . . . . . Vimu1g02436 . . .
Pvu1g0650 . . . . Aev07g1614 . . . . . . . . . . . Car04g03017 . . . . . Gma17g01821 . . Gso17g1632 . . . . . . . Lasa6g00798 . . . . . Mal1g5258 Mepo4g00882 . . Mtr1g0016 Phac1g00871 Phco2g00730 . Psa6g0854 . . . . . . . Tpr1g3193 Trre1g00933 Tsu01g00882 . . Vimu1g02434 . . Vra6g1452
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0641 Chr1 7682171 7682612 +
Pvu Pvu1g0642 Chr1 7710558 7710893 +
Pvu Pvu1g0643 Chr1 7720477 7724690 +
Aev Aev07g1328 Chr07 11998209 11999504 +
Pvu Pvu1g0644 Chr1 7738312 7742569 +
Apr Apr9g0012 Chr9 236788 240852 -
Phac Phac1g00864 Chr1 7356963 7361192 +
Phco Phco2g00726 Chr2 7578760 7582202 +
Psa Psa6g0844 Chr6 29721051 29724738 -
Spst Spst8g01806 Chr8 21855859 21859388 -
Vimu Vimu1g02450 Chr1 35477523 35482147 -
Vra Vra6g1463 Chr6 28886823 28890898 -
Pvu Pvu1g0645 Chr1 7760819 7763587 -
Apr Apr9g0004 Chr9 129848 132060 +
Car Car04g03059 Chr04 58579898 58582744 +
Lasa Lasa6g00749 Chr6 27322904 27324687 -
Mal Mal1g5314 Chr1 126637983 126640726 +
Mepo Mepo4g00825 Chr4 10774025 10776639 +
Mesa Mesa1g00854 Chr1 11267868 11270293 +
Mtr Mtr1g0074 Chr1 805423 808245 -
Phco Phco2g00727 Chr2 7610604 7612791 -
Spst Spst8g01805 Chr8 21844468 21851683 +
Tpr Tpr1g3235 Chr1 36792556 36794841 -
Tsu Tsu01g00841 Chr01 7593199 7595873 -
Vra Vra6g1462 Chr6 28877387 28882672 +
Pvu Pvu1g0646 Chr1 7798655 7807657 +
Car Car04g03032 Chr04 58247291 58248838 -
Lal Lal25g1113 Chr25 14506153 14512911 +
Lal Lal10g0072 Chr10 833875 838874 -
Lan Lan6g1731 Chr6 28552430 28558283 -
Lasa Lasa6g00783 Chr6 28401244 28405867 +
Lja Lja1g5701 Chr1 100810872 100816029 +
Mal Mal1g5274 Chr1 125958496 125966305 -
Mepo Mepo4g00855 Chr4 11231399 11238245 +
Mesa Mesa1g00897 Chr1 12043171 12046704 +
Mtr Mtr1g0038 Chr1 411655 417829 -
Phco Phco2g00728 Chr2 7642930 7654052 +
Spst Spst8g01804 Chr8 21835787 21837787 -
Tpr Tpr1g3208 Chr1 36521443 36527322 -
Trre Trre1g00916 Chr1 6948991 6955562 +
Tsu Tsu01g00870 Chr01 7901441 7906605 +
Vimu Vimu1g02441 Chr1 35373797 35377487 -
Pvu Pvu1g0647 Chr1 7814080 7822757 -
Arst Arst6g03442 Chr6 102099975 102111684 -
Mal Mal1g5272 Chr1 125900029 125910956 +
Mepo Mepo4g00860 Chr4 11266419 11277426 -
Mesa Mesa1g00899 Chr1 12073531 12083591 -
Mtr Mtr1g0035 Chr1 382315 395377 +
Tpr Tpr1g3206 Chr1 36491998 36502699 +
Trre Trre1g00918 Chr1 6961086 6970001 -
Tsu Tsu01g00872 Chr01 7912245 7922388 -
Vimu Vimu1g02439 Chr1 35281402 35290612 +
Pvu Pvu1g0648 Chr1 7830698 7842866 -
Aip Aip06g03167 Chr06 127459380 127468309 -
Arst Arst6g03441 Chr6 102099975 102111684 -
Car Car04g03030 Chr04 58202112 58209949 +
Phco Phco2g00729 Chr2 7660760 7685928 -
Spst Spst8g01802 Chr8 21807097 21827731 +
Vimu Vimu1g02437 Chr1 35267425 35274978 +
Pvu Pvu1g0649 Chr1 7847158 7848078 +
Adu Adu06g02686 Chr06 103101652 103102240 +
Aev Aev07g1612 Chr07 16527964 16528482 +
Bisa Bisa05g1252 Chr05 21982785 21983273 +
Dere Dere05g2196 Chr05 32088601 32089095 -
Glsi Glsi10g0891 Chr10 5743688 5744185 -
Gso Gso14g1146 Chr14 25596716 25597440 +
Sto Sto5g0669 Chr5 4505594 4506058 +
Vimu Vimu1g02436 Chr1 35258329 35258877 -
Pvu Pvu1g0650 Chr1 7859052 7865470 -
Aev Aev07g1614 Chr07 16566598 16581951 -
Car Car04g03017 Chr04 58074553 58080621 +
Gma Gma17g01821 Chr17 28929566 28942661 -
Gso Gso17g1632 Chr17 28148008 28161412 -
Lasa Lasa6g00798 Chr6 29214712 29218633 -
Mal Mal1g5258 Chr1 125717839 125721637 +
Mepo Mepo4g00882 Chr4 11452036 11458778 -
Mtr Mtr1g0016 Chr1 220051 226387 +
Phac Phac1g00871 Chr1 7465140 7468644 -
Phco Phco2g00730 Chr2 7697098 7719477 +
Psa Psa6g0854 Chr6 30089246 30093768 +
Tpr Tpr1g3193 Chr1 36385988 36392942 +
Trre Trre1g00933 Chr1 7081978 7087109 -
Tsu Tsu01g00882 Chr01 8033583 8055221 -
Vimu Vimu1g02434 Chr1 35225237 35229308 -
Vra Vra6g1452 Chr6 28683143 28689836 +