Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0844 ATGAACACATCCTCCCACTTGAATACCAACACCGACGCAACTGCCATTCTCTCTGTTGCCGCCGGTGCAAAGACCGGCCGCAAGGGAAGATTCTCGCTTATGGCCGCCGTGCAAACGAACTCTACTCCGGCGGTTGTCTTCACGGCCCTCGCCGGCGTCGCTATTGTCGCTGTCATTTTCTACGGTGCCAGTAGGAAAAGAAAACATGCCCTTTCACCTCAGCAATGGAAAATATTGTTTACAGAAGATGGTAGACTCCGTGATGGTGGAATTAAGCTCCTGAAAAGAGTGCGCAGTGGAGGTGTTGGTCCCAGAATAAGAGCTGAAGTCTGGCCATTCCTACTTGGAGTGTATAACTTTAACAGCACAAAGGATGAAAGAGATGCTGTGAGAACTCAAAATAGAAAAGAATATGAAACACTCCGTCGACAATGCAGGAAACTCGTAAAAAAACCCAATGAAATCAGTAAGTTAAATGAAATTGGTGAAATTAGCTACGAAGGAGGTGATGGAAGTCTTGTTCAAGATTCTGGTTCTTCTAGTTCTGATGATGCGGCCAGCGCCAGGGAGTTCCTCTCCAGTCAGGACAGGAGTCCAGAAGCTGAATATTCAGATTATCCATCCATTGTCTCATTGGAAGGAGATGATTATGTTAATGTCAACAAGGCTGATGCATCTTTACCGGATTCATATTTTTCCGAATCTCCTGAAGTAATTCAAACAGTTCCTCCGGATGATGATCAGGAAGATAACAACCCCGTGAAAACTACCAAGGATTCCGCTGATGGTCCTGAAGTAATTCAAACATCTCCTCCTGATGATGTTCAGGAAGACAACAACCCCATAGAAACTACCAAGGATTCCGCTGAAGTTCCTGAAGTAATTCAAACAGATCCTTCCGGTGATGTTCAGGAAGACAACAACCCCATGAAAATCACCAAGGATTCCGCTGAAGGTCCTGAAGTAATTCAAACAGCTCCTCCTGATGATGTTCATGAAGATAACAACCCCGCGAAAGCTACCAAAGAAGTCTCTTCTCCCTTGCAAGAAAAAGTTCCATCAAAGCCACCAACTAATGAAGACTTCTCCACCTGGCAACGGATTATCCGACTTGATGCATTGCGTGCTAATGCAGACTGGATGTCACACTATCCCTCTCAAGCGGCCGTATCAGACAGTGTGGCACGTCGTACTGCTGAGGCTGTTGGCTTGGAGGATTATGGCCACCTAGAGGCAGGCAGGATCTTCCATGCTGCCCGACTAGTTGCTATTCTTGAAGCATATGCACTATATGACCCTGAAATTGGCTATTGCCAAGGTATGAGTGACCTGCTATCTCCTATAGTTAGTATTATATCAGAGGATCACGAGGCTTTCTGGTGTTTCGTTGGATTCATGAAGAAGGCACGGCAAAATTTTAGGCTGGATGAGGTGGGTATAAGGAGGCAACTAGAGTTAGTTGCCAAAATAATCAAGTATAAAGATGCCCATCTATTTAAGCATTTAGAGAAGCTTCAGGCTGAAGATTGCTTCTTTGTATATAGGATGGTGGTGGTACTGTTTCGAAGAGAATTGACATTTGAGCAGACTATTTGCCTTTGGGAAGTAATGTGGGCAGATCAAGCTGCAGTCAGGGCAGGTATTGGGATTTCTGCATGGAACAAAGTTAGAAAGCGTGCGCCACCAACAGATGATTTGTTGCTTTATGCAATAGCAGCTTCGGTATTGCAGAGGAGGAAGTTGATCATTGAAAGGTATAGCAGCATGGATGAGATCATTAGGGAATGCAATAGCATGTCAGGACAGCTTGATGTTTTGAAATTGCTAGATGATGCACATAACTTAGTGATCACCCTTCATGATAAAATAGAGACATGA 1878 0.4462 MNTSSHLNTNTDATAILSVAAGAKTGRKGRFSLMAAVQTNSTPAVVFTALAGVAIVAVIFYGASRKRKHALSPQQWKILFTEDGRLRDGGIKLLKRVRSGGVGPRIRAEVWPFLLGVYNFNSTKDERDAVRTQNRKEYETLRRQCRKLVKKPNEISKLNEIGEISYEGGDGSLVQDSGSSSSDDAASAREFLSSQDRSPEAEYSDYPSIVSLEGDDYVNVNKADASLPDSYFSESPEVIQTVPPDDDQEDNNPVKTTKDSADGPEVIQTSPPDDVQEDNNPIETTKDSAEVPEVIQTDPSGDVQEDNNPMKITKDSAEGPEVIQTAPPDDVHEDNNPAKATKEVSSPLQEKVPSKPPTNEDFSTWQRIIRLDALRANADWMSHYPSQAAVSDSVARRTAEAVGLEDYGHLEAGRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVSIISEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLELVAKIIKYKDAHLFKHLEKLQAEDCFFVYRMVVVLFRRELTFEQTICLWEVMWADQAAVRAGIGISAWNKVRKRAPPTDDLLLYAIAASVLQRRKLIIERYSSMDEIIRECNSMSGQLDVLKLLDDAHNLVITLHDKIET* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0844 625 MobiDBLite consensus disorder prediction 174 201 - -
Psa6g0844 625 SMART tbc_4 98 564 IPR000195 -
Psa6g0844 625 Pfam Rab-GTPase-TBC domain 420 540 IPR000195 -
Psa6g0844 625 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 340 473 - -
Psa6g0844 625 MobiDBLite consensus disorder prediction 340 359 - -
Psa6g0844 625 MobiDBLite consensus disorder prediction 241 359 - -
Psa6g0844 625 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 478 616 IPR035969 -
Psa6g0844 625 MobiDBLite consensus disorder prediction 174 203 - -
Psa6g0844 625 Gene3D - 477 622 - -
Psa6g0844 625 ProSiteProfiles TBC/rab GAP domain profile. 101 541 IPR000195 -
Psa6g0844 625 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 13 623 - -
Psa6g0844 625 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 13 623 - -
Psa6g0844 625 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 76 501 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0844 Psa-Chr6 29721051 29724738 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0844 - - cam:101512839 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1730 5 134351573 134356472 Psa6g0844 6 29721051 29724738 ECH
Psa6g0844 6 29721051 29724738 Psa6g0844 6 29721051 29724738 ECH