Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0631 . . . . . . . . . . . . . . . . . . . . . . . Gma14g01605 Gso14g1347 . . . . . . . . . . . . . . . . . . . . Phco2g00717 . . . . . . Spst8g01817 . . . . . . . . . Vivi3g02894 .
Pvu1g0632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00718 . . . . . . . . . . . . . . . . . .
Pvu1g0633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00719 . . . . . . . . . . . . . . . . . .
Pvu1g0634 Acco05g1830 Accr3g01144 . . . . . . Alju07g1802 . . . . . Bisa05g0367 . . . Dere05g1507 . Enph7g0655 Glsi10g1336 . . . . . . . . . . . . . . . . . . . . . . . Phco2g00721 Prci2g1528 . . . . . . . Sto5g1281 . . . . . . . . .
Pvu1g0635 . . . . Aev07g1007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0636 . . . . . . . . . Amo16g3495 . . . . . . Car04g02943 Cca05g00025 . Dod08g1433 . . . Gma14g01598 Gso14g1344 . . . . . . . . Lasa5g02974 . . . . Lja1g5765 . Mepo4g01011 . . Mtr1g0876 . Phco2g00724 . . Pste8g02071 Pumo9g01028 Rops9g02400 Seca8g02645 Spst8g01814 . . . Trre1g01061 Tsu01g00996 . . Vimu1g02455 . Vivi4g04687 Vra6g1468
Pvu1g0637 . . . . . . . . . Amo16g3493 . . . . . . . . . . . . . Gma14g01586 Gso14g1333 Gso13g0251 . . . . . . . . . . . . . . . . . . . Phco2g00725 . . . . . . . . . . . . . . . . . Vra6g1467
Pvu1g0638 . . . . . . . . . . . Apr9g0016 . . . . . . . . . . . . . . . . . . . . . Lasa5g02952 . . . . . . . . . . . . . . . . . . Spst8g01807 . . . . . . . . . Vivi3g02911 .
Pvu1g0639 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 64 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0631 Chr1 7535226 7540023 +
Gma Gma14g01605 Chr14 41211313 41216443 -
Gso Gso14g1347 Chr14 39369550 39374618 -
Phco Phco2g00717 Chr2 7482336 7486187 +
Spst Spst8g01817 Chr8 22007607 22018311 -
Vivi Vivi3g02894 Chr3 48120459 48124857 -
Pvu Pvu1g0632 Chr1 7543127 7549440 -
Phco Phco2g00718 Chr2 7495589 7501917 -
Pvu Pvu1g0633 Chr1 7557668 7562759 -
Phco Phco2g00719 Chr2 7505833 7511886 -
Pvu Pvu1g0634 Chr1 7576092 7577377 +
Acco Acco05g1830 Chr05 34669374 34669757 +
Accr Accr3g01144 Chr3 12870409 12870792 -
Alju Alju07g1802 Chr07 44267728 44268111 +
Bisa Bisa05g0367 Chr05 6134603 6134995 -
Dere Dere05g1507 Chr05 24536303 24536689 +
Enph Enph7g0655 Chr7 12574367 12574633 +
Glsi Glsi10g1336 Chr10 9062717 9063103 -
Phco Phco2g00721 Chr2 7514185 7515911 +
Prci Prci2g1528 Chr2 11354540 11356856 -
Sto Sto5g1281 Chr5 8729803 8730189 -
Pvu Pvu1g0635 Chr1 7592218 7594269 +
Aev Aev07g1007 Chr07 7454832 7456522 -
Pvu Pvu1g0636 Chr1 7604890 7607275 +
Amo Amo16g3495 Chr16 144367629 144373192 -
Car Car04g02943 Chr04 56639125 56642312 -
Cca Cca05g00025 Chr05 520063 522817 -
Dod Dod08g1433 Chr08 27073268 27076355 -
Gma Gma14g01598 Chr14 40529863 40530344 -
Gso Gso14g1344 Chr14 38662529 38664989 -
Lasa Lasa5g02974 Chr5 523399162 523399808 +
Lja Lja1g5765 Chr1 102517758 102520376 +
Mepo Mepo4g01011 Chr4 13449692 13452092 +
Mtr Mtr1g0876 Chr1 10121399 10123911 +
Phco Phco2g00724 Chr2 7540411 7542423 +
Pste Pste8g02071 Chr8 17249166 17255145 +
Pumo Pumo9g01028 Chr9 26429225 26432098 -
Rops Rops9g02400 Chr9 44282020 44284376 -
Seca Seca8g02645 Chr8 61703920 61704579 +
Spst Spst8g01814 Chr8 21974137 21975919 -
Trre Trre1g01061 Chr1 8013161 8015449 +
Tsu Tsu01g00996 Chr01 9118374 9120918 +
Vimu Vimu1g02455 Chr1 35546712 35548841 -
Vivi Vivi4g04687 Chr4 175357001 175358742 +
Vra Vra6g1468 Chr6 28957415 28960436 -
Pvu Pvu1g0637 Chr1 7618948 7635797 +
Amo Amo16g3493 Chr16 144346881 144356945 -
Gma Gma14g01586 Chr14 39423689 39460037 +
Gso Gso14g1333 Chr14 37682415 37712280 +
Gso Gso13g0251 Chr13 13316256 13331071 +
Phco Phco2g00725 Chr2 7548208 7568574 +
Vra Vra6g1467 Chr6 28923092 28946396 -
Pvu Pvu1g0638 Chr1 7655746 7657228 +
Apr Apr9g0016 Chr9 258841 260406 +
Lasa Lasa5g02952 Chr5 520073861 520074841 -
Spst Spst8g01807 Chr8 21868489 21869412 -
Vivi Vivi3g02911 Chr3 48611916 48613202 +
Pvu Pvu1g0639 Chr1 7670555 7671096 +
Pvu Pvu1g0640 Chr1 7678523 7679100 +
Spst Spst8g01807 Chr8 21868489 21869412 -
Lasa Lasa5g02952 Chr5 520073861 520074841 -
Vivi Vivi3g02911 Chr3 48611916 48613202 +
Vivi Vivi3g02894 Chr3 48120459 48124857 -
Lasa Lasa5g02974 Chr5 523399162 523399808 +