Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00882 ATGAGATTAACAGAACCGCAGCCAAAGATACAAAGTACTGGTAGaaaaaaaaaacgggGCCAATTCCTTCTTCGCCTGAAAACCACCGAAGCTCTCTTATACTCTCCACTGCGCCGTCACCGGAAAACTCTTCCCTCGCTAAAAAGAATGAGTGTTCCAAATGCAACGGAGGATTTGTCGTCTGAAGTGGAGGTTGATGCGTTTCGACGCCTTTTTCCGCTTCGATATTTCGAGCGGCATCTTTCTGAATCTATTCGTCCAGATGGTAGACCATTAAAGGAAGCTAGAGATACTAGTATATTTCTTGGTTCTGTTGCATCTGCTAATGGATCAGCTCTTGTGAAGATTGGATCCACGACTATGTTGACTGCTATTAAAATGGAAGTTATGACTCCTTCCTTGGAGACACCGGATGAGGGTTGTTTAGCTATTGATTTCCACATGCCTGCAATTTGTTCTCCGATTGTTAGGCCCGGCAGGCCTGCTGAAGCAGAGCCGGTTGTGTCAAAGCAGTTATCCGACACTATTTCAAGGCAAGTTTTAATCTTTCATGTTGCTTTttcTGGAATGATTGATTTGAAAGAATTGTCGTTGGTTAGTGGAAAAGCTGCATGGATGGCTTACTTGGATATCTATTGTTTGGATGCTGATGGGGCTCTTTTTGACACTGCTTTACTTTCTGCAGTTTCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTATTGATGTCCGATGAAGATGGACAGAAGCACGCAAAGGAGCAAGTCAATAAGGAGAAGAGGAAGCTTACATTAAAAAGCATTCCATTATCGTTAACATGCATACTTCACAAGAGCTACATCTTGGCAGATCCTACTGCAGAAGAAGAATCCATAATGGAAACCCATGTGACAATTGTTTTGGATACACGCGGTCAACTAGTATCTCTTTACAAGCCTGGTGGGCCAGTTCTTGCCTATACTTCTGCTATTCAGGACTGTGTTGCCTTGACCAGGCAAAGAGTAAAGGAACTAAAGAGCTTCTTAGACGAAGCAAATTCTGCTATGGAGATTTTACTTTATAATCACAAGAGCAGAACAACAAACAAGTTTCAGGTTGATTGTATCAGTAACAAACATCATACAACAACAGCTGGTTCGCCGCAAGTCCGCAACACGGTTTCAGTTATTCGAATCTCTGCAACACCAGTTTTAGCTCCTCATCTTACTCAAACTCTCCTTCGTCGCgAGATTCAAACGCTGTTAGCTTTTGCTGTTTTGGCTTTAATCAAGGGTGTGAAAGAGGAGACATGGGAAGCTTTCATAGCTGATGCACTTTTCCTTGCCAAGATTTGTCTTTTTGCCCTTACCTTTACAATGGACCGCCGCATAGCCGTTTGGTATATTCTTGTATTTTTAGTTATACATGTGCTGACACAACAACCTCCATCTCAAGGACTAGGTACCTGTAACAAGCTAACACCATTGTTGTTGGAAAGCCTTCTAACAGAGGGGAACACATCAAGATTTTGGCTGGTGGAATTCAGTGCTTCTTATTCATCTGCTTGCATTCGCTCAAGTCAACAGTTTCCTGAGCTCTCAATTACATATTCAACCAAAATCTTATCATTTGGAATAGTTGATCTTGGACTCTTTCCCAATGCAGCTGAAAAATTTGGAGTATCTCTCAGTGGAAGCATGGGTCAGCTTccatcttttatcttatttgaCAATGCAACTGAAATTGCCCGCTTTCCAGCGTTGGGTTCCGAAACAACATTTTTCAACCCTAACATTACAAAGGGACTTCTTTCACGACATTTTGAGCTTGATCGGCACCTTCTTGAATATATTAATGCAACTGCTAGGGGTTTGAATCTCATTAATTCTCAACATGAAGCAACTGTTAGGTGTTTTGGTTCGGCCAACACTCACAAGAAAACACATATGGCAGCTTGGAAACCTCCCGATGGAGTTCCTACAACTCACCTTTACGCACCAGTTATTGACGTCATCAAGAGGTTCATTGATTATCCTTGCCTCTTGTCTTTCCATCATTCTTTGAGGGAAGACAATAGTTGTGCGGATTGGGTAGCTAAACATGGAGCAGAATTGAAGGGGGATGTGATTTCTTGGAGGCATTGCCCGACCGTTCTTTCTACCTACCTTCTTTTTGACTCAATGGGGATTTCCTTCCCCCAAACttaa 2211 0.417 MRLTEPQPKIQSTGRKKKRGQFLLRLKTTEALLYSPLRRHRKTLPSLKRMSVPNATEDLSSEVEVDAFRRLFPLRYFERHLSESIRPDGRPLKEARDTSIFLGSVASANGSALVKIGSTTMLTAIKMEVMTPSLETPDEGCLAIDFHMPAICSPIVRPGRPAEAEPVVSKQLSDTISRQVLIFHVAFSGMIDLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVSALSHLQIPAVAMNDDGKIVLMSDEDGQKHAKEQVNKEKRKLTLKSIPLSLTCILHKSYILADPTAEEESIMETHVTIVLDTRGQLVSLYKPGGPVLAYTSAIQDCVALTRQRVKELKSFLDEANSAMEILLYNHKSRTTNKFQVDCISNKHHTTTAGSPQVRNTVSVIRISATPVLAPHLTQTLLRREIQTLLAFAVLALIKGVKEETWEAFIADALFLAKICLFALTFTMDRRIAVWYILVFLVIHVLTQQPPSQGLGTCNKLTPLLLESLLTEGNTSRFWLVEFSASYSSACIRSSQQFPELSITYSTKILSFGIVDLGLFPNAAEKFGVSLSGSMGQLPSFILFDNATEIARFPALGSETTFFNPNITKGLLSRHFELDRHLLEYINATARGLNLINSQHEATVRCFGSANTHKKTHMAAWKPPDGVPTTHLYAPVIDVIKRFIDYPCLLSFHHSLREDNSCADWVAKHGAELKGDVISWRHCPTVLSTYLLFDSMGISFPQT 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00882 736 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 59 359 - -
Tsu01g00882 736 Gene3D Glutaredoxin 500 615 - -
Tsu01g00882 736 SUPERFAMILY Ribonuclease PH domain 2-like 271 357 IPR036345 -
Tsu01g00882 736 SUPERFAMILY Thioredoxin-like 499 587 IPR036249 -
Tsu01g00882 736 Pfam 3' exoribonuclease family, domain 1 94 238 IPR001247 -
Tsu01g00882 736 Gene3D - 64 359 IPR027408 -
Tsu01g00882 736 Pfam 3' exoribonuclease family, domain 2 277 323 IPR015847 -
Tsu01g00882 736 PANTHER - 59 359 - -
Tsu01g00882 736 SUPERFAMILY Ribosomal protein S5 domain 2-like 66 299 IPR020568 -
Tsu01g00882 736 CDD RNase_PH_RRP43 69 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00882 Tsu-Chr1 8033583 8055221 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00882 K12586 - gmx:100776087 515.383