Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02450 ATGTTCACATCCAACCACTTGAACAGCAACACCATCAACAGCAACAGCGACACCACCTTTCTCTCCGTTGGTGCCGGTCGTAAGTGCAAGTTCTGGTTAATGGCGGCTGTGGCCTCGCCCTCTACTCCGGCGGTGCTTTTCACCGCTCTCGCCGGCGTCGCCATCGTCGCCGTGATTTTCTACGGCGCCAGTAGCCACAATCCATCTTCGAATTCGTCTCCTCCTCCTTCACCTTCTCCTAATTCTAATTCTTCTTCTTCTTCATCCTCTTCTTCAACGTCGTCGTCTTGGACCCCTTTGCGTTCGGTTCTATTCGTTGTTTCCTCTTCCTCACCGGCTTCTTCTCGTTCTCCCTTCAATCGGGGCCGGCTTAAATCACCATGGTCACAAAGGAGAAGAAAACACGCTCTGTCAGCTCATCAATGGAAATCCTTGTTTACAGAAGATGGTAAATTCTGTGATGGTGGAAATAAGTTCCTGAGAAGAGTGCGCAGTGGAGGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCATTCTTGCTTGGAGTGTATGACTTAGGCAGCACCAAGGGTGAAAGAGATGTTATAAGAACTCAAAATAGAAAGCAGTATGAGAAACTCCGCAGACAATGTCGGAGACTCATCAAGCAAAGTAATGAGCAAAATAAGTTAAATGAAGTCGGTGAAATCAGCTTTGAGGGAGATGGTAAACTTCTGTCTCAAGATTCTGGTTCTGCCAGTTCTGATGATGCAGCCAGTGCTAGGGAATCTCTTTCTAGTGAGGATAGAAGCTCTGATGTTGACCGTTCCGACAATCTGTCCAGTGCCCTGTTGGAAGGAGAAAATGTGAATAACGCTGATGCCTCTACATTGGATACTGATTTCTCTGATTCGGACTCCTCTGAAGGTCCTGAAGTAATTCAGGCAGTTCCTTCTGATGATGTTAAGGAACATAACAATCCAGACAAAGCTTCCCAGGAATTATCTTCTACCACAAAAGCAAAAATCCCACCAAAGGCACCAACCAATGAAGATTTTTCCACCTGGCAACGAATAATCAGACTTGATGCAGTACGCGCTAATGCTGAATGGATGTCATGTTACCCATCTCAAGCCTCGGTATCAGAAAGTAGGGCACGTCGAAGTGCTGAGGCTGTTGGCTTGAAGGACTATGGTCACCTAGAGCCTGGCAGAATCTTCCATGCTGCTCGACTAGTTGCTATTCTTGAAGCATATGCTCTGTATGATTCTGACATTGGCTACTGCCAAGGTATGAGTGACCTGCTATCTCCTATAGTTAGTGTTATATCAGAGGATCATGAGGCTTTCTGGTGTTTTGTTGGATTCATGAAGAAGGCACGGCAAAATTTTAGGCTTGATGAAGTGGGTATTCGCAGGCAACTGGATTTAGTTGCAAAAATAATCAAGTTTAAGGATGCCCACCTTTTTAGGCATTTGGAAAAGCTTCAAGCTGAGGATTGTTTTTTTGTCTATAGAATGGTGGTGGTAATGTTTCGAAGGGAATTGACATTTGAACAGACCCTTTGCCTATGGGAAGTGATGTGGGCAGATCAAGCGGCAATAAGAGCAGGTATTGGGAAATCTTCGTGGAGCAGAATTAGGCAGCGTGCTCCACCAACAGAAGATTTATTACTTTATGCAATAGCAGCTTCGGTGTTGCAGAGAAGGAAATTGATCATTGAGAAGTACAGCAGCATGGATGAGATCATTAAGGAATGCAATAGTATGTCTGGTCATCTTGATGTTTGGAAACTGCTTGATGATGCACATAACTTAGTGGTCATCCTGCATGACAAAGTAGAGACATCATTCTCATGA 1839 0.4502 MFTSNHLNSNTINSNSDTTFLSVGAGRKCKFWLMAAVASPSTPAVLFTALAGVAIVAVIFYGASSHNPSSNSSPPPSPSPNSNSSSSSSSSSTSSSWTPLRSVLFVVSSSSPASSRSPFNRGRLKSPWSQRRRKHALSAHQWKSLFTEDGKFCDGGNKFLRRVRSGGVDPSIRAEVWPFLLGVYDLGSTKGERDVIRTQNRKQYEKLRRQCRRLIKQSNEQNKLNEVGEISFEGDGKLLSQDSGSASSDDAASARESLSSEDRSSDVDRSDNLSSALLEGENVNNADASTLDTDFSDSDSSEGPEVIQAVPSDDVKEHNNPDKASQELSSTTKAKIPPKAPTNEDFSTWQRIIRLDAVRANAEWMSCYPSQASVSESRARRSAEAVGLKDYGHLEPGRIFHAARLVAILEAYALYDSDIGYCQGMSDLLSPIVSVISEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDLVAKIIKFKDAHLFRHLEKLQAEDCFFVYRMVVVMFRRELTFEQTLCLWEVMWADQAAIRAGIGKSSWSRIRQRAPPTEDLLLYAIAASVLQRRKLIIEKYSSMDEIIKECNSMSGHLDVWKLLDDAHNLVVILHDKVETSFS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02450 612 Coils Coil 197 224 - -
Vimu1g02450 612 Gene3D - 461 608 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 238 254 - -
Vimu1g02450 612 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 324 457 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 110 132 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 235 343 - -
Vimu1g02450 612 Pfam Rab-GTPase-TBC domain 404 524 IPR000195 -
Vimu1g02450 612 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 462 599 IPR035969 -
Vimu1g02450 612 FunFam GTPase-activating protein gyp7 isoform X1 461 606 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 67 96 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 324 343 - -
Vimu1g02450 612 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 146 485 IPR035969 -
Vimu1g02450 612 ProSiteProfiles TBC/rab GAP domain profile. 167 525 IPR000195 -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 110 124 - -
Vimu1g02450 612 SMART tbc_4 164 570 IPR000195 -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 82 96 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 270 305 - -
Vimu1g02450 612 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 327 457 - -
Vimu1g02450 612 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 126 580 - -
Vimu1g02450 612 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02450 Vimu-Chr1 35477523 35482147 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02450 - - aprc:113846503 860.907