Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01584 . . . . . . . . . . . . . . . . . .
Pvu11g1440 . . . . . . . . . . . . . . . . . Cca04g01263 . . . . . Gma06g02482 . Gso6g2236 . . . . . . . . . . . . . . . . . . . Phco9g01590 . . . Pumo11g00902 . Seca4g04698 Spst11g00794 . . . . . Vian5g00605 . Vimu5g01122 Viun11g01059 . Vra2g1129
Pvu11g1441 . . . . . . . . . . . Apr3g0935 . Bach9g00618 . Bva07g01881 . Cca04g01264 . Dod03g1968 . . . Gma06g02481 . Gso6g2235 . . . . . . . . . . . . . . . . . . . Phco9g01591 . . . Pumo11g00901 Rops3g01645 . Spst11g00793 . . . . . Vian5g00604 . Vimu5g01121 Viun11g01060 . Vra2g1128
Pvu11g1442 . . . . . . . . . . Amo03g0354 . . . . . Car06g01914 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac11g01907 . . Psa7g3733 . . . . . Ssu3g1993 . . . . . . . . . Vra2g1124
Pvu11g1443 . . . . . . . . . . . . . . Bisa02g3101 . . . Dere07g0163 . . Glsi04g0949 . . Gso12g1120 . . . . . . . . . . Lele30g0727 . . . . . . . . . . . Psa7g3731 . . . . . . Sto4g0008 . . . . . . . . Vra2g1123
Pvu11g1444 . . . . . . . . . . . . . . . . . . . . . . Gma12g01216 . . . . Lal2g0475 . . Lan8g1441 Lan13g0548 Lapu5g00831 Lasa7g02725 . . . . Lja3g3087 . . . . . . . . Psa7g3729 Pste1g03718 . . . . . . . . . . . . . . Vra2g1122
Pvu11g1445 . . Adu03g01586 Aed5g1012 . . Ahy13g1709 . . Amo13g2170 . . Arst3g02094 . . . . . . . . . . . . . Lal1g0532 . Lal9g0463 . Lan8g1440 . . . . . . . . . Mepo2g02847 Mesa13g02193 . Mtr4g2579 . . . . . . . . . . . . Trre7g02153 Tsu02g03038 . . . . Vivi5g03493 Vra2g1121
Pvu11g1446 . . . . . . . Aip03g01919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g3727 . . . . . . . . . . . . . . Vivi5g03494 Vra2g1120
Pvu11g1447 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0528 . Lan7g0547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lapu Lapu5g00831 Chr5 8652709 8654217 -
Lja Lja3g3087 Chr3 58436990 58438174 -
Pvu Pvu11g1438 Chr11 32974787 32977182 +
Pvu Pvu11g1439 Chr11 33052027 33054060 -
Phco Phco9g01584 Chr9 37027213 37048212 -
Pvu Pvu11g1440 Chr11 33083553 33086519 +
Cca Cca04g01263 Chr04 15341657 15344313 -
Gma Gma06g02482 Chr06 47289632 47292505 +
Gso Gso6g2236 Chr6 43245584 43247982 +
Phco Phco9g01590 Chr9 37282840 37287542 -
Pumo Pumo11g00902 Chr11 33074641 33076481 +
Seca Seca4g04698 Chr4 87451326 87453763 +
Spst Spst11g00794 Chr11 31728811 31730466 +
Vian Vian5g00605 Chr5 21883318 21886963 +
Vimu Vimu5g01122 Chr5 18866152 18867611 +
Viun Viun11g01059 Chr11 22983139 22986936 -
Vra Vra2g1129 Chr2 14365211 14368436 -
Pvu Pvu11g1441 Chr11 33106396 33109249 +
Apr Apr3g0935 Chr3 24299256 24302527 +
Bach Bach9g00618 Chr9 4289841 4293041 -
Bva Bva07g01881 Chr07 16898425 16900834 +
Cca Cca04g01264 Chr04 15351174 15353639 -
Dod Dod03g1968 Chr03 44249505 44252345 +
Gma Gma06g02481 Chr06 47283711 47287657 +
Gso Gso6g2235 Chr6 43238080 43240752 +
Phco Phco9g01591 Chr9 37301317 37304204 -
Pumo Pumo11g00901 Chr11 33068343 33070416 +
Rops Rops3g01645 Chr3 25547289 25550026 +
Spst Spst11g00793 Chr11 31723730 31725427 +
Vian Vian5g00604 Chr5 21876636 21878930 +
Vimu Vimu5g01121 Chr5 18851035 18851602 +
Viun Viun11g01060 Chr11 22983139 22985301 -
Vra Vra2g1128 Chr2 14332601 14335671 -
Pvu Pvu11g1442 Chr11 33170458 33173104 +
Amo Amo03g0354 Chr03 6582830 6586437 +
Car Car06g01914 Chr06 19095656 19099381 +
Phac Phac11g01907 Chr11 27318134 27320832 -
Psa Psa7g3733 Chr7 314393362 314394329 -
Ssu Ssu3g1993 Chr3 65253712 65258103 +
Vra Vra2g1124 Chr2 14274150 14277214 -
Pvu Pvu11g1443 Chr11 33199594 33207158 -
Bisa Bisa02g3101 Chr02 78794585 78799836 +
Dere Dere07g0163 Chr07 3586260 3593939 -
Glsi Glsi04g0949 Chr04 7587249 7598616 -
Gso Gso12g1120 Chr12 15710558 15722697 +
Lele Lele30g0727 Chr30 11775570 11780769 -
Psa Psa7g3731 Chr7 314380947 314383576 +
Sto Sto4g0008 Chr4 69553 82923 +
Vra Vra2g1123 Chr2 14255580 14264911 +
Pvu Pvu11g1444 Chr11 33235531 33236973 +
Gma Gma12g01216 Chr12 15848859 15850782 -
Lal Lal2g0475 Chr2 2876379 2877307 -
Lan Lan8g1441 Chr8 21539332 21540149 -
Lan Lan13g0548 Chr13 4242438 4243960 -
Lapu Lapu5g00831 Chr5 8652709 8654217 -
Lasa Lasa7g02725 Chr7 543637845 543638618 -
Lja Lja3g3087 Chr3 58436990 58438174 -
Psa Psa7g3729 Chr7 314321116 314322398 -
Pste Pste1g03718 Chr1 18110372 18111777 -
Vra Vra2g1122 Chr2 14247944 14249091 -
Pvu Pvu11g1445 Chr11 33238533 33241127 -
Adu Adu03g01586 Chr03 25118969 25127543 +
Aed Aed5g1012 Chr5 7990336 7999404 +
Ahy Ahy13g1709 Chr13 26692044 26700581 +
Amo Amo13g2170 Chr13 35960434 35969098 +
Arst Arst3g02094 Chr3 25424923 25433422 +
Lal Lal1g0532 Chr1 3423056 3432155 +
Lal Lal9g0463 Chr9 3052764 3061956 +
Lan Lan8g1440 Chr8 21534076 21537142 +
Mepo Mepo2g02847 Chr2 38247807 38256862 +
Mesa Mesa13g02193 Chr13 25707930 25716710 -
Mtr Mtr4g2579 Chr4 39341871 39350964 +
Trre Trre7g02153 Chr7 17110751 17119765 +
Tsu Tsu02g03038 Chr02 33600085 33607805 +
Vivi Vivi5g03493 Chr5 127073282 127081479 +
Vra Vra2g1121 Chr2 14216011 14233206 +
Pvu Pvu11g1446 Chr11 33244798 33248228 -
Aip Aip03g01919 Chr03 25663809 25672238 +
Psa Psa7g3727 Chr7 314280760 314291838 +
Vivi Vivi5g03494 Chr5 127073285 127083353 +
Vra Vra2g1120 Chr2 14181106 14184616 +
Pvu Pvu11g1447 Chr11 33278653 33281545 +
Lal Lal2g0528 Chr2 3179771 3183658 +
Lan Lan7g0547 Chr7 4129086 4132605 +