Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2579 ATGCTTTCTGCTAGCAAACTCAAATCCGTTGATTTTTACAGAAAAATCCCAAGAGATTTGACCGAGGCGTCGTTGTCGGGAGCAGGATTATCCATTCTGGCGGCTCTCGCCATGATGTTTTTGTTTGGAATGGAACTTAGTAATTATTTTGCTGTTACCACCTCTACATCGGTGATTGTTGACAAAAGTTCTGATGGTGACTTTTTGCGCATCGATTTCAATTTCAGTTTTCCTGCACTCTCATGCGAATTTGCATCGGTTGATGTGAGTGACGTGCTGGGAACAAACAGGCTCAATATAACAAAAACGGTTCGTAAGTTTTCTATTGATTCAAAGTTAAGGCCCACTGGCTCCGAGTTTCATTCGGGAACGATTGCAAATGCTGTTAAGCATGACGATGAAGTAGACACAGACTTTGTTGAAGGTTCTTTGCCACTCACATCACAGCACTTTGATAAATATGTTCAGCTGTTTCCAATCACAGTTGTAAATTTTTATGCACCTTGGTGTTCCTGGTGCCAACGTTTGAAACCTTCATGGGAGAAGGCGGCTAAAATAATGAGAGAGAGATATGATCCAGAAATGGATGGGCGTATTCTTTTGGCAAAGGTAGATTGCACTCAAGAAGGTGATTTATGCAGGAGGCATCACATACAAGGGTATCCGTCTATTCGCATCTTTCGGAAAGGAAGTGATGTCAGAAGCGACCATGGACATCATGAACATGAGTCCTATTATGGAGACCGTGATACAGAAAGCCTAGTCAAGACCATGGAGACTTTAGTGGCATCTCTCCCAACAGGATCTCAACATCTAGCTTTGGAGGATAAATCCAATGGAACAAAAAGACCAGCACCGTCAACCGGTGGATGTAGAGTTGAGGGATATGTGCGTGTGAAAAAGGTTCCAGGAAGCTTGGTTGTCTCAGCTAGATCAGATGCACATTCATTTGATGCTTCTCAAATGAACATGTCACATGTCATCAACCATCTATCTTTTGGAAAAAAAGTGACACCTAGAGCCATGATTGATGTGAAGCATTGGATACCATACTTAGGTATTAACCATGACAGGCTGAATGGACGGTCATTTATCAACACTCGTGATTTGGAAGGGAATGTTACTATAGAGCATTATATTCAGGTAGTTAAAACAGAGGTAATAACCAGAAAAGGTTATAAATTAATCGAAGAGTACGAGTACACAGCACACAGCAGTGTGGCACACAGCGTGAACATTCCTGTTGCAAGGTTCCATCTTGAGCTCTCCCCTATGCAGGTCTTAATAACAGAAAACCAGAAGTCTTTTTCACATTTTATTACAAATGTCTGTGCTATCATTGGGGGTGTTTTCACGGTAGCTGGAATCCTTGACTCGATTCTGCATAACACCATTAAGGCAATGAAAAAAATTGAGATTGGCAAGAATTTTTGA 1434 0.4149 MLSASKLKSVDFYRKIPRDLTEASLSGAGLSILAALAMMFLFGMELSNYFAVTTSTSVIVDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGTNRLNITKTVRKFSIDSKLRPTGSEFHSGTIANAVKHDDEVDTDFVEGSLPLTSQHFDKYVQLFPITVVNFYAPWCSWCQRLKPSWEKAAKIMRERYDPEMDGRILLAKVDCTQEGDLCRRHHIQGYPSIRIFRKGSDVRSDHGHHEHESYYGDRDTESLVKTMETLVASLPTGSQHLALEDKSNGTKRPAPSTGGCRVEGYVRVKKVPGSLVVSARSDAHSFDASQMNMSHVINHLSFGKKVTPRAMIDVKHWIPYLGINHDRLNGRSFINTRDLEGNVTIEHYIQVVKTEVITRKGYKLIEEYEYTAHSSVAHSVNIPVARFHLELSPMQVLITENQKSFSHFITNVCAIIGGVFTVAGILDSILHNTIKAMKKIEIGKNF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2579 477 SUPERFAMILY Thioredoxin-like 143 261 IPR036249 -
Mtr4g2579 477 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Mtr4g2579 477 Pfam Endoplasmic reticulum vesicle transporter 286 458 IPR012936 -
Mtr4g2579 477 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 477 IPR045888 -
Mtr4g2579 477 Gene3D Glutaredoxin 139 281 - -
Mtr4g2579 477 ProSiteProfiles Thioredoxin domain profile. 124 263 IPR013766 -
Mtr4g2579 477 Pfam Thioredoxin 145 243 IPR013766 -
Mtr4g2579 477 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 477 - -
Mtr4g2579 477 CDD PDI_a_family 144 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2579 Mtr-Chr4 39341871 39350964 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2579 - - aprc:113860202 843.188