Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03493 ATGTTTTCCGCTAGCAAAATCAAAGCGGTTGATTTTTACAGAAAAATCCCTAGAGATTTGACTGAGGCGTCGTTGTCGGGAGCGGGGTTATCCATTGTGGCAGCTCTCTCCATGATGTTTTTGTTTGGAATGGAACTTAATAATTATTTTGCTGTCAGCACTACTACATCTGTGATTGTTGACAAAAGTTCTGATGGTGACTTTTTACGTATAGATTTCAATATGAGTTTTCCTGCTCTCTCTTGTGAGTTTGCATCGGTCGATTTGAATGACGTGCTGGGAACAAACAGGCTCAATATAACAAAAACAATTCGTAAGTTTTCTATAGATTCAAATTTAAGACCCACTGGCTCCGAGTTTCATTCGGGAACGATTGCAAATGCTGTTAAGCATGATGATGAAGTAGATGAAGAATTTGTTGAAGGAGCTTTGCCACTCACGTCACATAGCTTTGATAAATTTATTCAGCAGTTTCCAATTACAGTTGTAAATTTTTATGCACCTTGGTGTTCCTGGTGCCAACGTTTGAAACCTTCATGGGAGAAGGCAGCTAAAATAATGAGAGAGAGATATGATCCAGAAATGGATGGACGTATTCTGTTGGCAAAGGTAGATTGCACTAAAGAAAGTGATTTATGCAGGAGGCATCACATACAAGGGTATCCGTCTATTCGCATCTTTCGGAAAGGAAGTGATGTCAGAAGTGACCATGGACATCATGAACATGAGTCCTATTATGGAGATCGTGATACAGAAAGCCTAGTCAAGACAATGGAGAGTTTAGTGGCATCTCTTCCAACAGGATCTCAACATCTAGCTTTGGAGGATAAATCCAATGGAACTGAAAATGTAAAAAGACCCGCACCATCAACCGGTGGATGTAGAATTGAGGGATATGTACGTGTGAAAAAGGTTCCAGGAAGCTTGGTTATCTCAGCTAGATCAGATGCACATTCATTTGATGCTTCTCAAATGAACATGTCACATGTCGTAGACCATCTGACTTTTGGAAAAAAAGTGATGCCTAGAGCCTTGAGTGACGTGAAGCATTGGATACCATACATAGGAAGAAACCATGACAGGCTTAATGGACGGTCATTTATCAACACTCGTGATTTCGAAGGAAATGTTACTGTAAGTATAATATTTTATATAGAATTTTCTTATAACTCAGTTCAAGCTTTACTATTGGAATTTGTATGGTTGATATAG 1212 0.3911 MFSASKIKAVDFYRKIPRDLTEASLSGAGLSIVAALSMMFLFGMELNNYFAVSTTTSVIVDKSSDGDFLRIDFNMSFPALSCEFASVDLNDVLGTNRLNITKTIRKFSIDSNLRPTGSEFHSGTIANAVKHDDEVDEEFVEGALPLTSHSFDKFIQQFPITVVNFYAPWCSWCQRLKPSWEKAAKIMRERYDPEMDGRILLAKVDCTKESDLCRRHHIQGYPSIRIFRKGSDVRSDHGHHEHESYYGDRDTESLVKTMESLVASLPTGSQHLALEDKSNGTENVKRPAPSTGGCRIEGYVRVKKVPGSLVISARSDAHSFDASQMNMSHVVDHLTFGKKVMPRALSDVKHWIPYIGRNHDRLNGRSFINTRDFEGNVTVSIIFYIEFSYNSVQALLLEFVWLI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03493 403 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
Vivi5g03493 403 Pfam Endoplasmic reticulum vesicle transporter 289 343 IPR012936 -
Vivi5g03493 403 Gene3D Glutaredoxin 140 286 - -
Vivi5g03493 403 Pfam Thioredoxin 145 243 IPR013766 -
Vivi5g03493 403 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 5 368 IPR045888 -
Vivi5g03493 403 SUPERFAMILY Thioredoxin-like 144 261 IPR036249 -
Vivi5g03493 403 CDD PDI_a_family 144 258 - -
Vivi5g03493 403 ProSiteProfiles Thioredoxin domain profile. 114 263 IPR013766 -
Vivi5g03493 403 FunFam Protein disulfide-isomerase 5-4 131 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03493 Vivi-Chr5 127073282 127081479 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03493 - - aprc:113860202 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03493 5 127073282 127081479 Vivi5g03493 5 127073282 127081479 ECH