Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1443 ATGTGGAGAGATCCTGGTGCTCCCGCTGATTCTTTTTATGAAACTCGTCCAGAGTGCACTGATGTTCCAAAGTCACGATTTAGGATCAAGGCTGGGAAAACATTGAGTGCAAGAAAATGGCATGCTGCATTTTCTCCAGAAGGGTATCTAGATATAGGCAAGACCCTAAGCCGAATCCACCGAGGGGGAATCCATCCATCGATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATGAAATAAGACAACGTCGAAGGGATCTTTATAATACATGGAAAGAAGAATGTCGTATATTGTTTCCTCTTGTAGGAAGTGGTAGATTTATCACAGCACCTGTAATTAGTGAAGATGGTACACCATGTCAAGATCCATTGGTTTTGTTAGAAAATAATCCAGACATTGGACCAATTGTACCCCAAGAGGTTAATGCTTCAAATAACTTAGAAAAGATCACAGACAAGAGAATAATTCAATGGTTGTTAACACTCCATCAAATAGGTCTTGATGTGGTTCGTACTGATAGAACATTAGTATTTTATGAAAAGAAAGAAAACTTGTCAAAACTATGGGATATTCTTAGTGTTTATGCTCGAATAGATTCAGATGTTGGCTATGGTCAAGGAATGAGTGACCTATGCTCTCCTATGATAATACTTCTTAATGATGAAGCTGATGCTTTTTGGTGCTTTGAACGTTTGATGCGTAGATTGAGAGGAAATTTTAGATGCACTGCTAACTCTGTTGGGGTGGAGACTCAATTAAGTAATTTGGCAACAATCACTCAAGTAATTGATCCAAAACTTCATCAACATATAGAAGAAATTGGTGGAGGTGACTATCTGTTTGCTTTTCGGATGATAATGGTTCTATTTCGACGAGAATTCTCCTTTTGTGACTCGTTGTACCTTTGGGAGATGATGTGGGCCCTAGAATATGATCCTGACTTGTTTTGGATATATGAGGAGGATGATGACAAATCTGAGGAAACGAAAGGAAGAATGAAGTCATTACGTCACTATGGGAAGTATGAGAGAGAAAATATGAAAAATGGTGCAAAGAATGGAGAAGATCCTACCTTTCCCATATCTGTTTTCCTTGTTGCTAGTGTCTTGAAGGAAAAAAGTGCAATATTACTCCAACAAGCAAGAGGCTTGGATGATGTCGTCAAGATATTGAATGATGTAAATGGAAATCTTGATGCCAAGAAAGCTTGTGTGGCTGCACTGAAACTACACAAAAAGTATTTGAAAAAGGCTAAGAATCCCTAA 1302 0.3848 MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFEERDEIRQRRRDLYNTWKEECRILFPLVGSGRFITAPVISEDGTPCQDPLVLLENNPDIGPIVPQEVNASNNLEKITDKRIIQWLLTLHQIGLDVVRTDRTLVFYEKKENLSKLWDILSVYARIDSDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTANSVGVETQLSNLATITQVIDPKLHQHIEEIGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPDLFWIYEEDDDKSEETKGRMKSLRHYGKYERENMKNGAKNGEDPTFPISVFLVASVLKEKSAILLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKNP* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1443 433 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 433 - -
Pvu11g1443 433 Gene3D - 258 432 - -
Pvu11g1443 433 ProSiteProfiles TBC/rab GAP domain profile. 63 322 IPR000195 -
Pvu11g1443 433 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 433 - -
Pvu11g1443 433 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 282 IPR035969 -
Pvu11g1443 433 Pfam Rab-GTPase-TBC domain 154 320 IPR000195 -
Pvu11g1443 433 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 153 252 - -
Pvu11g1443 433 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 260 426 IPR035969 -
Pvu11g1443 433 SMART tbc_4 60 345 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1443 Pvu-Chr11 33199594 33207158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1443 - - gmx:100782079 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0958 5 27474756 27482898 Pvu11g1443 11 33199594 33207158 PCT