Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1120 ATGTGGAGAGATCCTGGGGCTCCCGCTGATTCTTTTTATGAAACTCGTCCTGAGTGCACCGATGTTCCCAAGTCTCGATTTAGGATCAAGGCTGGCAAAACATTAAGTGCAAGAAAATGGCATGCTGCATTTTCTCCAGAAGGGTATTTAGATATAGGCAAGACTCTGAGTCGAATCCATCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTCAAGAAAGAGATGAGATAAGACAACGTCGTAGGGAGCAATATGCTAATTGGAAGGAAGAATGTCGTAAGTTGTTTCCTCTCATAGGAAGTGGTAGATTTATCACAGCACCTGTAATTACTGAAGATGGTAGACAGGTTCAAGATCCCTTGGTTTTGTTAGAAAATAATCCAAATAATGGATTGGTTATACCCACGGAGGTTACCACTAATGATACAAATAACTTAAAAAAGGTGACAGACAAAGGAGTAATTCAATGGATGTTAACGCTCCATCAAATAGGTCTTGATGTGATACGCACTGATAGAACATTGATTTTTTATGAAAAGAAAGAGAACTTATCAAAACTTTGGGATATTCTCAGTGTTTATGCTCGAATAGATTCAGATGTTGGCTATGGTCAAGGAATGAGTGACCTATGCTCTCCTATGATAATACTTCTTAATGATGAGGCTGATGCATTTTGGTGCTTTGAGCGTTTGATGCGTCGATTGCGAGGAAATTTTAGATGCACTGATAACTCTGTTGGTGTTGAGGCTCAATTAAGTACTTTGGCTACTATCACTCAAGTAATTGATCCAAAACTTCATCAACATATAGAACATATTGGTGGAGGTGACTATCTATTTGCTTTTCGGATGATAATGGTTCTATTTCGACGAGAATTCTCTTTTTGCGATTCGTTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCGATTTGTTTTGGATGTACGAGGATGATGATGACAAATCTGAGGAATCTAAAGGAAGATTAAAGTCATTGCGCCACTATGGAAAGTATGAAAGAGAAAATATGAAAAATGGAGCAAAGAATGGTGAAGATCCCCCCCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTACTAAAAGACAAAAGCACAATGTTACTCCAGCAAGCAAAAGGCTTGGATGATGTTGTCAAGATATTGAATGATGTAAATGGAAATCTTGATGCTAAAAAAGCTTGTGTGGCTGCATTAAAACTTCACAAGAAATATTTGAAAAAGGCTAAGAATCCTTAG 1308 0.3846 MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFQERDEIRQRRREQYANWKEECRKLFPLIGSGRFITAPVITEDGRQVQDPLVLLENNPNNGLVIPTEVTTNDTNNLKKVTDKGVIQWMLTLHQIGLDVIRTDRTLIFYEKKENLSKLWDILSVYARIDSDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDNSVGVEAQLSTLATITQVIDPKLHQHIEHIGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPDLFWMYEDDDDKSEESKGRLKSLRHYGKYERENMKNGAKNGEDPPLPISVFLVASVLKDKSTMLLQQAKGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKNP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1120 435 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 284 IPR035969 -
Gso12g1120 435 SMART tbc_4 60 347 IPR000195 -
Gso12g1120 435 ProSiteProfiles TBC/rab GAP domain profile. 63 324 IPR000195 -
Gso12g1120 435 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 262 428 IPR035969 -
Gso12g1120 435 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 435 - -
Gso12g1120 435 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 435 - -
Gso12g1120 435 Pfam Rab-GTPase-TBC domain 159 322 IPR000195 -
Gso12g1120 435 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 154 254 - -
Gso12g1120 435 Gene3D - 260 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1120 Gso-Chr12 15710558 15722697 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1120 - - gmx:100782079 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1801 12 41672899 41680811 Gso12g1120 12 15710558 15722697 PCT
Gso11g3063 11 46503984 46511788 Gso12g1120 12 15710558 15722697 PCT