Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2170 ATGATTTCTGCCAGCAAACTCAAATCCGTCGATTTTTACAGGAAAATCCCACGAGATTTGACTGAGGCGTCACTATCAGGGGCGGGATTATCCATAATAGCAGCTTTCTCCATGATCTTTTTATTTGGAATGGAACTAAATAATTATTTGACTGTAAGCACCTCTACATCAGTGATTGTTGACCAGAGTTCTGATGGAGACTTTTTACGTATAGATTTCAATATCAGTTTTCCTGCGCTCTCATGTGAGTTTGCATCAGTTGATGTGAAAGACGTGCTGGGAACAAACAGGCTCAATATAACAAAAACGGTTCGGAAATTTTCTATTGATTCAAGTTTAAGGCCCACTGGTGCTGAGTTTCATTCAGGACCCGTTGCAAATGCTGTTAGGCATGATGATGAAGTAGATGAAGAATACGWTGAAGGTTCTTTTGCACTCACAGAACAAAATTTTGATAAATATGTTCATCAGTTTCCGCTTACCATTGTAAATTTTTATGCTCCTTGGTGTTCCTGGTGTCAGCGTTTGAAACCTTCATGGGAGAAGGCAGCTAAAATAATGAAAGAGAGGTATGATCCCGAAATGGATGGACGCATTCTTGTAACAAAGGTAGATTGCACTCGAGAAGGTGATTTATGCAGGAGGAATCACATACAYGGTTATCCATCTATTCGCATCTTTCGGAAAGGAACTGACCTCAGAAGTGACCATGGACATCATGAACACGAGTCCTATTATGGAGATCGTGATACAGAAAGCCTAGTCAAGATGATGGAAAGTTTAGTAGAATCTCTCCCAAAAGAATCTCAGAAGCTAGCATTGGAGGATAAATCCAATGTAGCAGAGAAAAGACCTGCACCATCAGCTGGTGGATGTAGAATTGAGGGATATGTACGTGTGAAAAAGGTTCCCGGATTCTTGATTGTCTCAGCTAGATCAGAGTCGCATTCCTTTGATGCTTCTCAAATGAACATGTCACATGTCATAAACCATCTTTCTTTCGGAAGAAAATTGACACCTAGGGCCATGAGCGATGTGAAGCGGTTGATACCTTACATAGGTAGCAGCCATGACAGGCTGAATGGTAGATCATTCATCAATCCTCGTGTTTCAGAAGCAAATGTTACTATAGAGCATTATATTCAGATAGTTAAAACAGAGGTAATAACTAGAAAAGGTTATAAATTAATTGAGGAGTACGAATACACAGCGCATAGCAGTCTGGCTCACAGTGTAGACATTCCTGTTGCGAAGTTCCATCTTGAGCTGTCCCCCATGCAGGTCTTGATAACCGAAAGCCAGAGGTCCTTTTCACATTTTATTACTAATGTTTGCGCAATTATTGGGGGAGTTTTCACGGTAGCTGGAATTATTGACTCAATTCTGCACAACACAATTAAAATAATGAAAAAAATTGAGATAGGCAAGAATTTTTGA 1437 0.3994 MISASKLKSVDFYRKIPRDLTEASLSGAGLSIIAAFSMIFLFGMELNNYLTVSTSTSVIVDQSSDGDFLRIDFNISFPALSCEFASVDVKDVLGTNRLNITKTVRKFSIDSSLRPTGAEFHSGPVANAVRHDDEVDEEYXEGSFALTEQNFDKYVHQFPLTIVNFYAPWCSWCQRLKPSWEKAAKIMKERYDPEMDGRILVTKVDCTREGDLCRRNHIHGYPSIRIFRKGTDLRSDHGHHEHESYYGDRDTESLVKMMESLVESLPKESQKLALEDKSNVAEKRPAPSAGGCRIEGYVRVKKVPGFLIVSARSESHSFDASQMNMSHVINHLSFGRKLTPRAMSDVKRLIPYIGSSHDRLNGRSFINPRVSEANVTIEHYIQIVKTEVITRKGYKLIEEYEYTAHSSLAHSVDIPVAKFHLELSPMQVLITESQRSFSHFITNVCAIIGGVFTVAGIIDSILHNTIKIMKKIEIGKNF* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2170 478 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 478 - -
Amo13g2170 478 CDD PDI_a_family 146 258 - -
Amo13g2170 478 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Amo13g2170 478 Pfam Endoplasmic reticulum vesicle transporter 279 459 IPR012936 -
Amo13g2170 478 ProSiteProfiles Thioredoxin domain profile. 114 263 IPR013766 -
Amo13g2170 478 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 478 IPR045888 -
Amo13g2170 478 Gene3D Glutaredoxin 137 286 - -
Amo13g2170 478 Pfam Thioredoxin 145 242 IPR013766 -
Amo13g2170 478 SUPERFAMILY Thioredoxin-like 144 262 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2170 Amo-Chr13 35960434 35969098 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2170 - - aprc:113860202 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2170 13 35960434 35969098 Amo13g2170 13 35960434 35969098 ECH