Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01584 ATGGCCACTCGCGCCTTGCTTGGAGTGATCAAGAAACGCGCCGTTTCGTGCCCCGCATTCACCGGCCACTCCATTTTTCGACACGCTAGCACGCTCGTTGTGGCGGAACACGAAGGTGGCGTTATCAAACCCCCTTCTCTCTCTGCACTTGCCGCTGCCACGTGTCTTCCCGACCCTGACTCTTCCGTTGCGGTGCTGTTGGCCGGTTCCGGTCCTTCTCTTCATCAAGCTGCTTCACACGCTGCTTCGTCCTACCCTTCGATCTCCAAGGTGCTCGTGGCAGATTCTGATAAATTCAAGAACCCTCTGGCAGAGCCTTGGGCTAAACTAGTTCATTTGGTTCAGCAGAGTGGTGGTTACTCTCACATATTTGCTGCTGCAAATTCTTTTGCGAAAAATGTAATGCCACGTGCTGCTGCTCTTTTAGATGTTTCTCCAATTACCGATGTTACTGGAATTTCTGATTCCAATACTTTTGTTAGGCCAATATATGCTGGAAATGCACTTTGTACTGTTCGATATACTGGTGCCAATCCTTGTATATTAACAATTAGATCCACATCTTTTCCTGTTCCTCAAAACTCAGTTGACTCTAATAAGGCTTCAATATCTCAGGTTGACCTTTCAACCTTGGAAGAAGATCTGGGCAAGTCTACATATATATCTCAAACTTCTCAGGATGATGAACGACCAGATCTTGGGAATGCACGGATTGTAGTTACTGGTGGCCGAGCACTAAAGAGTGCTGAGAACTTTAAATTGATAGAAGATCTAGCCAAGAAACTTGGTGCTGCTGTTGGTGCCACTCGTGCTGCCGTTGATGCAGGATATGTTCCTAATGATCTCCAGGTAGGGCAAACTGGAAAGATAGTTGCCCCTGAGCTCTATATGGCTTTCGGTGTATCTGGAGCTATTCAGCACTTGGCAGGGATGAGGGATTCGAAAGTCATTGTTGCTGTGAACAATGATGCCGATGCTCCTATATTTCAGGTCGCCGATTATGGACTCGTCGGAGATCTGTTTGAGGTGATACCCGAGTTACTGGAGAAGCTTCCTGAGAAAAATGGTATCATAGTACCCTCCCACGGTACTGACCGGGGTTCGATTCCCCGGATGCGCAACAGTATTATGGATGTAAAGTTTAGCAGAATGGATAAAGAAATTGGTGGGACAACTTGTGTCTACTGGCGAGCTGGGAGATGCAACAGAAATCCATGCAAATTTCTATACAGAGAAACATCCTCACTACATGTTAATGCCAGAAGCAAATATTGTGGAAAAAAACCTCATTCATCCTCTAATAATACTTCCAAATATAACCCCAAGAAAACTTTGGTTAGAAAGAGAGAAGATGGGAGCAATGTTGTTAAGTTGTCTAAGAAATCATCTCCAAGTACATGCAAATATTGGACCAACAACAACTGTGTGTATGGTGAACAATGCCTGGATTTACATTCATGGTTTCATGATGATGGGTTTTCCACATTAACAAAACTTCATCAACACAAAAAGGCTATCACCGAAATTACGCTTCTAGCTGGATCCAACAAACTTTATTCTGGAAGCACCGATGGAACCGTTCGCATATGGGATTACCATACAGGTCAATGCGTTAAAGTCTTAAATTTTGGCACCCAAGTTAACTCTTTGATAAGTGAGGGGCTATGGGTTTTTGTTGGTTTGAACAATGCTATCAAGGCTTTGAATACTGAGACCAATTTGGAGTTTACTCTTGATGGACCCAAAGGAAGGATCCTTCACATGACTGTTGGTAACAACATCCTTTTTGTCGGGGCAGAGGATGGTGTCATTATTGCCTGGAGAGAAACCTCTGAAGCTAAGTCTCCTTTTAAATTAGTTGGCTCACTAACTGGCCACACTAAATCTGTGGTTTGCCTAACTGTTGGACGTAAGATGTTGTACTCCGGATCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAATGTACAATGACACTCAATGAACGTAATGATGTAGTCACATCCCTTATTTGTTGGGATGAATTTTTGTTGTCAAGTTCATCTGATGGCACAATTAAGATTTGGGCATGCATGGAAGTAGGAACTTTGAATGTGGGCATTGTCTCACTTTTTGGGATGCCTGATGAAAAAGGCAAGCACATATTGTTTTCCTCTTGTAGAGACAATTCAGTACGCATGTACGCATTGCCATCGGGTCTTTTATATGCTAAGAAAGACATTTCATCTTTCGAGTTAGGCTCTGATGGACTCTTCTTCACTGGTGATGGGACTGGTTTGGTTAGCATATGGAAATGGAATGAGTTACCTAAGATGACATCCAATTGA 2337 0.4356 MATRALLGVIKKRAVSCPAFTGHSIFRHASTLVVAEHEGGVIKPPSLSALAAATCLPDPDSSVAVLLAGSGPSLHQAASHAASSYPSISKVLVADSDKFKNPLAEPWAKLVHLVQQSGGYSHIFAAANSFAKNVMPRAAALLDVSPITDVTGISDSNTFVRPIYAGNALCTVRYTGANPCILTIRSTSFPVPQNSVDSNKASISQVDLSTLEEDLGKSTYISQTSQDDERPDLGNARIVVTGGRALKSAENFKLIEDLAKKLGAAVGATRAAVDAGYVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNNDADAPIFQVADYGLVGDLFEVIPELLEKLPEKNGIIVPSHGTDRGSIPRMRNSIMDVKFSRMDKEIGGTTCVYWRAGRCNRNPCKFLYRETSSLHVNARSKYCGKKPHSSSNNTSKYNPKKTLVRKREDGSNVVKLSKKSSPSTCKYWTNNNCVYGEQCLDLHSWFHDDGFSTLTKLHQHKKAITEITLLAGSNKLYSGSTDGTVRIWDYHTGQCVKVLNFGTQVNSLISEGLWVFVGLNNAIKALNTETNLEFTLDGPKGRILHMTVGNNILFVGAEDGVIIAWRETSEAKSPFKLVGSLTGHTKSVVCLTVGRKMLYSGSMDQSIKVWDMDTLQCTMTLNERNDVVTSLICWDEFLLSSSSDGTIKIWACMEVGTLNVGIVSLFGMPDEKGKHILFSSCRDNSVRMYALPSGLLYAKKDISSFELGSDGLFFTGDGTGLVSIWKWNELPKMTSN 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01584 778 SMART WD40_4 734 768 IPR001680 GO:0005515
Phco9g01584 778 SMART WD40_4 656 693 IPR001680 GO:0005515
Phco9g01584 778 SMART WD40_4 492 531 IPR001680 GO:0005515
Phco9g01584 778 SMART WD40_4 616 653 IPR001680 GO:0005515
Phco9g01584 778 SMART WD40_4 571 608 IPR001680 GO:0005515
Phco9g01584 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Phco9g01584 778 SMART ETF_2 31 219 IPR014730 -
Phco9g01584 778 PRINTS G protein beta WD-40 repeat signature 680 694 IPR020472 -
Phco9g01584 778 PRINTS G protein beta WD-40 repeat signature 640 654 IPR020472 -
Phco9g01584 778 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Phco9g01584 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 536 - -
Phco9g01584 778 Pfam WD domain, G-beta repeat 495 531 IPR001680 GO:0005515
Phco9g01584 778 Pfam WD domain, G-beta repeat 659 692 IPR001680 GO:0005515
Phco9g01584 778 Pfam WD domain, G-beta repeat 618 653 IPR001680 GO:0005515
Phco9g01584 778 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 295 321 IPR018206 -
Phco9g01584 778 Gene3D - 450 552 IPR015943 GO:0005515
Phco9g01584 778 Pfam Electron transfer flavoprotein FAD-binding domain 232 312 IPR014731 -
Phco9g01584 778 Gene3D - 553 776 IPR015943 GO:0005515
Phco9g01584 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 656 - -
Phco9g01584 778 SUPERFAMILY WD40 repeat-like 491 739 IPR036322 GO:0005515
Phco9g01584 778 MobiDBLite consensus disorder prediction 424 441 - -
Phco9g01584 778 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 30 200 - -
Phco9g01584 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 662 IPR001680 GO:0005515
Phco9g01584 778 MobiDBLite consensus disorder prediction 424 460 - -
Phco9g01584 778 CDD ETF_alpha 30 207 IPR033947 -
Phco9g01584 778 FunFam Electron transfer flavoprotein subunit alpha, mitochondrial 30 224 - -
Phco9g01584 778 ProSiteProfiles Zinc finger C3H1-type profile. 461 488 IPR000571 GO:0046872
Phco9g01584 778 Gene3D HUPs 30 227 IPR014729 -
Phco9g01584 778 SUPERFAMILY DHS-like NAD/FAD-binding domain 231 351 IPR029035 -
Phco9g01584 778 Pfam Electron transfer flavoprotein domain 31 209 IPR014730 -
Phco9g01584 778 ProSitePatterns Trp-Asp (WD) repeats signature. 640 654 IPR019775 -
Phco9g01584 778 Gene3D - 228 354 - -
Phco9g01584 778 FunFam Electron transfer flavoprotein, alpha subunit 226 355 - -
Phco9g01584 778 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 29 352 IPR001308 GO:0009055|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01584 Phco-Chr9 37027213 37048212 Tandem