Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1993 ATGGCTTCCACCATCACCTCCTCATTCCTCTCCACCCCCAAACTCTCATCACGCCCTTCATCTCTCTCCAGCAAAACCCCCTCCTTCAATGCCCCTCTCGCCCTTCGCCCCCAGCCCCACGCGCCACGCGCGTCCATGTCGGCGGCGTCGCCGCCCTACGACCTGGGCTCCTTCAGGTTCGAGCCGATTAAGGAGTCCATCGTGTCGCGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGACGTCGTCATCGTCGGCGCCGGCTCCGCGGGGCTCTCCTGCGCCTACGAACTCAGCAAAACCCCCTCCGTCAACGTCGCCATCGTCGAACAGTCCGTCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCCGCACATCTTTTCCTAGACGAGCTTGGTGTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCCGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCTAGGCCAAACGTGAAGCTTTTCAATGCCGTGGCAGCTGAGGACTTGATTGTGAAGAATGGGAGGGTTGGTGGGGTTGTGACCAATTGGGCTTTGGTTTCCATGAACCATGACACCCAATCCTGCATGGACCCCAATGTCATGGAGGCTAAGGTGGTGGTGAGTTCTTGTGGGCATGATGGCCCCTTTGGAGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGTTGATTGATAGTGTCCCAGGAATGAAGGCCCTTGACATGAACAAGGCAGAGGATGCTATTGTGAGACTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGAATGGGTCCAACATTTGGAGCAATGATGATATCAGGGCAGAAAGCAGCCCATTTGGCTTTGAGATCATTGGGACTTCCCAATGCATTGGATTCTGTAGGAAACGTCAATCCTGAGCTTGTCCTAGCCGCTGCTGATTCTGCCGAAACTGCAGACGCTTAA 1050 0.5619 MASTITSSFLSTPKLSSRPSSLSSKTPSFNAPLALRPQPHAPRASMSAASPPYDLGSFRFEPIKESIVSREMTRRYMTDMVTHADTDVVIVGAGSAGLSCAYELSKTPSVNVAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDSVPGMKALDMNKAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRSLGLPNALDSVGNVNPELVLAAADSAETADA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1993 349 MobiDBLite consensus disorder prediction 1 31 - -
Ssu3g1993 349 Gene3D - 85 320 IPR036188 -
Ssu3g1993 349 Pfam Thi4 family 69 302 - -
Ssu3g1993 349 SUPERFAMILY FAD/NAD(P)-binding domain 45 313 IPR036188 -
Ssu3g1993 349 MobiDBLite consensus disorder prediction 1 49 - -
Ssu3g1993 349 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 329 IPR027495 GO:0009228
Ssu3g1993 349 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 7 349 - -
Ssu3g1993 349 Gene3D - 54 84 - -
Ssu3g1993 349 PANTHER THIAMINE THIAZOLE SYNTHASE 7 349 - -
Ssu3g1993 349 TIGRFAM TIGR00292: thiazole biosynthesis enzyme 65 319 IPR002922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1993 Ssu-Chr3 65253712 65258103 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1993 K03146 - gmx:547462 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1993 3 65253712 65258103 Ssu3g1993 3 65253712 65258103 ECH