Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01576 . . . . . . . . . . . . . . . . . .
Pvu11g1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01577 . . . . . . . . . . . . . . . . . .
Pvu11g1430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1431 . . . . . . . . . . . . . . . . . . . . . . . . . Gso6g2244 . . . . . . . . . . . . Lja3g2423 . . . . . . . . . . . . . Spst11g00802 . . . . . . . . . . .
Pvu11g1432 . . . . . . . . . . . . . . . . . . . . . . Gma12g01210 Gma06g02496 Gso12g1115 . . . . . . . . . . . . . . . . . . . . Phco9g01578 . . Pste1g03707 . . . . Ssu3g2003 . . . . . . Vimu5g01156 . . Vra2g1106
Pvu11g1433 . . . Aed5g1003 . . . . . . . . . . . . . Cca04g01251 . . . . . . . Gso6g2243 . . . . . . . . . . . . Lja3g2422 . . . . . . Phco9g01579 . . . Pumo11g00913 . . Spst11g00801 Ssu3g2001 . . . . Vian5g00623 . . Viun11g01104 . .
Pvu11g1434 . . . Aed5g1004 . . . . . . . . . . . . . Cca04g01254 . . . . Gma12g01211 Gma06g02494 Gso12g1116 Gso6g2242 . . . . . . . . . . . . Lja3g2420 . . . . . . Phco9g01581 . . Pste1g03708 Pumo11g00911 . . Spst11g00800 Ssu3g2000 . . . . Vian5g00622 . Vimu5g01153 Viun11g01102 . Vra2g1107
Pvu11g1435 . . . Aed5g1005 . . . . . . . . . . . . . Cca04g01256 . . . . Gma12g01212 . Gso12g1118 . . . . . . . . . . . . . Lja3g2419 . . . . . . Phco9g01582 . . Pste1g03713 Pumo11g00909 . . Spst11g00799 Ssu3g1999 . . . . Vian5g00249 . Vimu5g01147 Viun11g01075 . Vra2g1111
Pvu11g1436 . . . . . . . . . . . . Arst3g01950 . . . . . . . . . . . . . . . . . . . Lapu5g00818 . . . . . Lja3g3080 . . . . . . . . Psa7g3148 . . . . . . . . . . . . . . Vivi7g01313 .
Pvu11g1437 . . . . . . . . . . . . Arst3g01949 . . . . . . . . . . . . . . . . . . . Lapu5g00819 . . . . . Lja3g3081 . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lapu Lapu5g00819 Chr5 8429710 8430755 +
Lja Lja3g3081 Chr3 58363484 58365059 +
Lapu Lapu5g00818 Chr5 8411636 8413176 +
Lja Lja3g3080 Chr3 58359239 58361017 +
Vivi Vivi7g01313 Chr7 67492515 67494044 -
Arst Arst3g01950 Chr3 23106214 23107701 -
Arst Arst3g01949 Chr3 23089692 23091276 -
Pvu Pvu11g1428 Chr11 32608802 32609217 +
Phco Phco9g01576 Chr9 36892854 36893173 +
Pvu Pvu11g1429 Chr11 32625394 32625842 +
Phco Phco9g01577 Chr9 36906154 36906475 +
Pvu Pvu11g1430 Chr11 32632403 32633169 -
Pvu Pvu11g1431 Chr11 32661656 32663550 -
Gso Gso6g2244 Chr6 43381289 43394554 +
Lja Lja3g2423 Chr3 29720079 29726181 +
Spst Spst11g00802 Chr11 31813187 31818331 +
Pvu Pvu11g1432 Chr11 32667745 32675106 -
Gma Gma12g01210 Chr12 15720899 15734661 -
Gma Gma06g02496 Chr06 47434752 47447018 +
Gso Gso12g1115 Chr12 15558372 15573330 -
Phco Phco9g01578 Chr9 36941202 36946466 -
Pste Pste1g03707 Chr1 18029088 18040448 -
Ssu Ssu3g2003 Chr3 65376513 65388696 +
Vimu Vimu5g01156 Chr5 19435573 19447172 -
Vra Vra2g1106 Chr2 13706851 13723550 -
Pvu Pvu11g1433 Chr11 32672801 32675106 -
Aed Aed5g1003 Chr5 7910884 7917659 -
Cca Cca04g01251 Chr04 15185460 15192246 -
Gso Gso6g2243 Chr6 43381284 43383957 +
Lja Lja3g2422 Chr3 29717236 29718309 +
Phco Phco9g01579 Chr9 36948364 36949437 -
Pumo Pumo11g00913 Chr11 33188776 33189147 +
Spst Spst11g00801 Chr11 31806267 31810088 +
Ssu Ssu3g2001 Chr3 65360635 65369402 +
Vian Vian5g00623 Chr5 22325428 22326501 +
Viun Viun11g01104 Chr11 23872843 23883133 +
Pvu Pvu11g1434 Chr11 32690935 32691873 -
Aed Aed5g1004 Chr5 7919920 7920953 -
Cca Cca04g01254 Chr04 15230371 15231565 -
Gma Gma12g01211 Chr12 15748858 15750703 -
Gma Gma06g02494 Chr06 47420640 47421586 +
Gso Gso12g1116 Chr12 15586500 15587999 -
Gso Gso6g2242 Chr6 43368288 43369543 +
Lja Lja3g2420 Chr3 29681536 29682393 +
Phco Phco9g01581 Chr9 36964923 36965540 -
Pste Pste1g03708 Chr1 18043913 18045252 -
Pumo Pumo11g00911 Chr11 33177146 33178092 +
Spst Spst11g00800 Chr11 31803553 31804173 +
Ssu Ssu3g2000 Chr3 65346970 65347708 +
Vian Vian5g00622 Chr5 22310460 22310931 +
Vimu Vimu5g01153 Chr5 19343249 19343697 +
Viun Viun11g01102 Chr11 23716254 23717046 +
Vra Vra2g1107 Chr2 13798601 13799361 -
Pvu Pvu11g1435 Chr11 32739700 32743093 +
Aed Aed5g1005 Chr5 7924606 7927575 +
Cca Cca04g01256 Chr04 15249577 15251551 +
Gma Gma12g01212 Chr12 15790923 15794531 +
Gso Gso12g1118 Chr12 15628144 15631766 +
Lja Lja3g2419 Chr3 29642820 29644905 -
Phco Phco9g01582 Chr9 37002128 37005088 +
Pste Pste1g03713 Chr1 18070816 18074400 +
Pumo Pumo11g00909 Chr11 33148557 33151647 -
Spst Spst11g00799 Chr11 31797312 31798896 -
Ssu Ssu3g1999 Chr3 65336807 65340734 -
Vian Vian5g00249 Chr5 5184407 5184992 +
Vimu Vimu5g01147 Chr5 19243636 19245860 -
Viun Viun11g01075 Chr11 23427833 23430833 -
Vra Vra2g1111 Chr2 13953181 13955690 +
Pvu Pvu11g1436 Chr11 32882773 32884119 -
Arst Arst3g01950 Chr3 23106214 23107701 -
Lapu Lapu5g00818 Chr5 8411636 8413176 +
Lja Lja3g3080 Chr3 58359239 58361017 +
Psa Psa7g3148 Chr7 231009559 231011374 -
Vivi Vivi7g01313 Chr7 67492515 67494044 -
Pvu Pvu11g1437 Chr11 32937479 32939130 -
Arst Arst3g01949 Chr3 23089692 23091276 -
Lapu Lapu5g00819 Chr5 8429710 8430755 +
Lja Lja3g3081 Chr3 58363484 58365059 +