Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0980 . . . . . . Aed10g2042 . . . . . . . . . . . Apr3g1950 . . . . . . . . Bva14g01986 Car06g01425 . Cca09g01412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g03466 . . . . . . . . . Lja4g3989 . . . Mepo2g03453 . Mesa13g01696 . . . . . . . Phco4g02452 . . Psa7g2347 . . Pste3g03453 . . . . . Pumo6g01685 . Pvu2g2206 . Rops2g01854 . Seca12g05106 . Spst3g00426 Ssu5g1866 . . . . . . Trre7g03935 . . . Vian1g03047 . Vifa6g02248 . Vimu11g03367 . Viun3g01679 . . Vra7g1548 .
Vvi3g0981 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0982 . . . . . . . . Aev04g0745 . Ahy20g0670 . Aip10g00675 . . . Amo20g0459 . . . . . Bach7g00817 . . . Bva13g00953 . . . . . . . Dod03g0248 . . . . . . . . . . . . . . . . . Lal5g1797 . . . . . . . . . Lasa1g00257 . . . . . . . . . . . . . Mepo6g00249 . . . . . . . . . Phco11g00252 . . . . . Pste2g01789 . Pte19g00541 . . . Pumo2g01004 . Pvu6g2072 . Rops11g00345 . Seca6g05065 . Spst6g00622 . . . . . . . Trre3g00275 . . . Vian6g01916 . Vifa1g10689 . Vimu2g00486 . Viun6g02981 . Vivi1g08524 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0973 Chr3 10426468 10426770 +
Vvi Vvi3g0974 Chr3 10533096 10533761 +
Vvi Vvi3g0975 Chr3 10535661 10544446 +
Vvi Vvi3g0976 Chr3 10582024 10582504 +
Vvi Vvi3g0977 Chr3 10585210 10585332 +
Vvi Vvi3g0978 Chr3 10689814 10691163 -
Vvi Vvi3g0979 Chr3 10701301 10703180 +
Vvi Vvi3g0980 Chr3 10713234 10717087 -
Aed Aed10g2042 Chr10 24339466 24342515 -
Apr Apr3g1950 Chr3 35525029 35529174 -
Bva Bva14g01986 Chr14 12386166 12387613 -
Car Car06g01425 Chr06 13869516 13872156 +
Cca Cca09g01412 Chr09 37392650 37396864 +
Lasa Lasa7g03466 Chr7 597606248 597609291 -
Lja Lja4g3989 Chr4 72960673 72965207 -
Mepo Mepo2g03453 Chr2 44188803 44196811 -
Mesa Mesa13g01696 Chr13 20236794 20241560 +
Phco Phco4g02452 Chr4 45690590 45693452 +
Psa Psa7g2347 Chr7 167195121 167198177 -
Pste Pste3g03453 Chr3 27163780 27167730 +
Pumo Pumo6g01685 Chr6 25242866 25246960 +
Pvu Pvu2g2206 Chr2 37672536 37676636 +
Rops Rops2g01854 Chr2 28969049 28972412 +
Seca Seca12g05106 Chr12 138985125 138989465 -
Spst Spst3g00426 Chr3 7367078 7370212 +
Ssu Ssu5g1866 Chr5 55287809 55291753 -
Trre Trre7g03935 Chr7 47619085 47620987 -
Vian Vian1g03047 Chr1 50437849 50440585 +
Vifa Vifa6g02248 Chr6 792669185 792672574 +
Vimu Vimu11g03367 Chr11 54483600 54486456 +
Viun Viun3g01679 Chr3 11668165 11670884 -
Vra Vra7g1548 Chr7 33442736 33445883 +
Vvi Vvi3g0981 Chr3 10777679 10784797 +
Vvi Vvi3g0982 Chr3 10825633 10834213 -
Aev Aev04g0745 Chr04 4592373 4598485 +
Ahy Ahy20g0670 Chr20 7325630 7332019 +
Aip Aip10g00675 Chr10 7084578 7090417 +
Amo Amo20g0459 Chr20 5700981 5707180 +
Bach Bach7g00817 Chr7 19355678 19363476 +
Bva Bva13g00953 Chr13 4565955 4571298 -
Dod Dod03g0248 Chr03 2623124 2629382 -
Lal Lal5g1797 Chr5 19884667 19890750 +
Lasa Lasa1g00257 Chr1 16813539 16818868 -
Mepo Mepo6g00249 Chr6 2415168 2421795 -
Phco Phco11g00252 Chr11 1643459 1649095 -
Pste Pste2g01789 Chr2 18286631 18297278 -
Pte Pte19g00541 Chr19 4303219 4306050 +
Pumo Pumo2g01004 Chr2 15094372 15105602 +
Pvu Pvu6g2072 Chr6 30468304 30474845 +
Rops Rops11g00345 Chr11 4747454 4754647 -
Seca Seca6g05065 Chr6 117910801 117918097 +
Spst Spst6g00622 Chr6 5626539 5632346 -
Trre Trre3g00275 Chr3 1840779 1847148 -
Vian Vian6g01916 Chr6 36380853 36385886 +
Vifa Vifa1g10689 Chr1 1796644516 1796650178 +
Vimu Vimu2g00486 Chr2 2775937 2776539 -
Viun Viun6g02981 Chr6 32724062 32730621 +
Vivi Vivi1g08524 Chr1 243897626 243903160 +