Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01916 ATGGCCGCAGTTCTTCCCGAAACCAAGTTCACTGTTCCCGGGTTCGGGTCCAAGACATTCTCCTTCAACCCGGGCCCGTTTAACATGAAGGAGCACGTCCTCATTACCATCTTCGCCAACGCCGGAAGCGCTTTCGGAAACGGGTCGCCCTACGCTGTTGGTATCGTGAACATTGTCAAAGCTTTTTACGGACGCAGTATCTCCTTTTTCGCTTCTTGGCTCCTCATCATTACTACACAGGTACTAGGATATGGATGGGCCGGATTACTGAGGAAATACGTGGTGGAACCGGCCCATATGTGGTGGCCCAGCACCCTCGTCCAAGTTTCACTTTTCCGAGCATTGCATGAGAAAGATGACCCAGGACTTACATCACGGTCCAAGTTTTTCTTTATTGCACTATCATGCAGTTTTTTGTGGTACGTGGTCCCTGGATACTTGTTCACAACGCTCACAAATATCTCATGGGTGTGTTGGATATTCTCCAAGTCAGTCACAGCTCAGCAGATAGGATCAGGCATGAGGGGGCTTGGAGTTGGAGCCCTCACACTTGATTGGGCTGCTGTGGCATCATTCTTGTTCAGCCCTCTTATATCACCCTTCTTTGCCATTGCCAATGTTTTTGTGGGTTATGCATTAATAGTGTATGTCGTTACTCCTATAGCATATTGGGGCCTCAATGTGTACAATGCCAATAGGTTTCCCATTTTCTCCTCACACTTGTTTACAGCCCAAGGTCAAAGGTACAACATATCTGCCATTGTAGACAATCATTTTGAGTTGAATGTTGCAGAGTATGAAAAGCAAGGTAGAATTCATCTCAGTGTGTTTTTCGCTCTCACTTATGGCTTTGGATTTGCCACCGTAGCATCCACCCTCACACATGTGTTCTGCTTCTACGGAAGGGAGATTATGGAGCGCTATCGTGCTTCTTCCAACGGGAAAAAAGATATTCACACAAAATTGATGAAAAGATACCAAGACATACCTTCCTGGTGGTTTTATTTATTGCTGTTTGTGACCCTTGTGGTTTCTCTCGCACTATGCATCTTTCTCAACGACCAGGTTCAAATGCCGTGGTGGGGACTTCTCTTTGCTGCAGCCCTAGCTTTCGGATTTACCCTTCCTATTAGCATCATCACTGCCACCACAAACCAGACACCAGGATTGAATGTCATCACTGAGTATGTCTTTGGTCTCATTTACCCGGGAAGACCGATTGCAAATGTATGCTTCAAAACTTTTGGTTACATCAGCATGGCCCAGGCTGTCTCTTTCCTCGCTGATTTCAAACTTGGGCACTACATGAAAATCCCTCCAAGATCAATGTTCTTAATTCAGTTCATAGGTACAATGCTAGCTGGAACCATCAACATTGGGGTAGCATGGTGGTTGCTGAACTCCATAAAGAACATATGTCATGACGATCTCCTTCCAGAAGACAGTCCCTGGACATGCCCAGGTGACCGTGTATTCTTTGATGCATCAGTTATTTGGGGCCTTGTGGGACCAAAGCGGATCTTTGGTTCTCTAGGAAACTACAGTGCATTGAATTGGTTTTTCCTTGGAGGTGCATTGGGACCTATAATTGTTTGGCTATTGCACAAAGCATTTCCAAAAAATTCATGGATTCCACTGATAAACCTCCCAGTTCTCCTAGGAGCAACTGCATATATGCCACCAGCAACACCATTGAACTACAATTCATGGATTTTGATTGGGACAATTTTCAACTTCTTTATCTTCCGTTACAGAAAGAAGTGGTGGCAAAGGTACAACTATGTTCTGTCAGCGGCACTTGACAGCGGAGTTGCTTTTATGACGGTCTTGCTCTACTTCTCATTGGGTTTGGAAAACAAGAATCTAAATTGGTGGGGAAATGATGGAGAACATTGTCCACTCGCAGTTTGCCCAACTGCAAAAGGCGTAATCGTTGATGGTTGTCCCGCAAAGTAA 1956 0.453 MAAVLPETKFTVPGFGSKTFSFNPGPFNMKEHVLITIFANAGSAFGNGSPYAVGIVNIVKAFYGRSISFFASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDDPGLTSRSKFFFIALSCSFLWYVVPGYLFTTLTNISWVCWIFSKSVTAQQIGSGMRGLGVGALTLDWAAVASFLFSPLISPFFAIANVFVGYALIVYVVTPIAYWGLNVYNANRFPIFSSHLFTAQGQRYNISAIVDNHFELNVAEYEKQGRIHLSVFFALTYGFGFATVASTLTHVFCFYGREIMERYRASSNGKKDIHTKLMKRYQDIPSWWFYLLLFVTLVVSLALCIFLNDQVQMPWWGLLFAAALAFGFTLPISIITATTNQTPGLNVITEYVFGLIYPGRPIANVCFKTFGYISMAQAVSFLADFKLGHYMKIPPRSMFLIQFIGTMLAGTINIGVAWWLLNSIKNICHDDLLPEDSPWTCPGDRVFFDASVIWGLVGPKRIFGSLGNYSALNWFFLGGALGPIIVWLLHKAFPKNSWIPLINLPVLLGATAYMPPATPLNYNSWILIGTIFNFFIFRYRKKWWQRYNYVLSAALDSGVAFMTVLLYFSLGLENKNLNWWGNDGEHCPLAVCPTAKGVIVDGCPAK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01916 651 Pfam OPT oligopeptide transporter protein 7 614 IPR004813 GO:0035673
Vian6g01916 651 PANTHER ISP4 LIKE PROTEIN 1 649 IPR004648 GO:0055085
Vian6g01916 651 NCBIfam OPT family oligopeptide transporter 1 617 IPR004813 GO:0035673
Vian6g01916 651 NCBIfam small oligopeptide transporter, OPT family 3 621 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01916 Vian-Chr6 36380853 36385886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01916 1 651 Organic Solute Cotransporters AT5G64410 80.184 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01916 - - gmx:100811348 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01916 6 36380853 36385886 Vian6g01916 6 36380853 36385886 ECH
Vian6g01916 6 36380853 36385886 Vian1g03063 1 50982467 50986831 PCT