Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2042 ATGGCTTTGCTCTGGTTCCTTAAACTGGCCCTCAAATTCCTTCATCACTTCGCATGGCCTCTTCTTGCTTTGGTGTATCCTCTATGTGCTTCCGTACAAGCAATCGAGACTGATTCCAATAAAGAAACTAGGGATTTGATCTCATATTGGATACTTCTTTCCCTTTCTCATTCCCAAATTGACCGCAGAAGATTAGTCCATTCAAGGTCTAGAGATCCAAGAACCTTGATTCTGCAAATAGAAAGCAATTTGAGATCTCTGAGTTGGTTGATTGATCCTAGAGTGTTCCAGTTCTGGCCTTACTTTAAGCTAATGATAATCTTCTGGCTCATCATGCCAGACTTTAGACGAGCTTCTTATGCCTATAATAACGTTATTCGCACTTGCATCTCCTTAAATCCACAAGCAGTCATGTGTAGGTTGTTAAATAATTGGAGGAAGCTTTTTGTTAAGAATGATGACTTTTTACTGCATGTAGAGAGATATGTTAATGAGAATGGAACTGAAGCTTTAGACAAACTCATAGCTAGCAAGAACACAACTTATAAACCTGATGCAGAAGGAACAAATGCAATAAGAGGTATAGATAATAAGGAAACGCAACAGACAAATGAGAAAAAGCCCCAAACAGAGCACAAAGCCATCGAAGATTTGGAGGTGATCGAGAAAAAAGAAATTCCTGCTGGCAAGCAAAATGCTTCACCAGCCATGGTGGAAACTAAAGGATTGGTGGAGAAAGTGAAAGACAAAGCTCGTATACTAGAGCTTCCTCAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACTTGCGCGTTATGTCATGTAACGACGTCGAGTGAGAAGACCTTGATTGATCACATTCATGGGAGGAAACACAAGGCTACTTTTGAAGCTCTGAAAGCACAACAAAATCAACCTGCTCCTCAGAAGGTGATCAAAAGTGATCAGGCCAAAGAGGAATTGAAACAGAAGAACATTAGGAAACACAAGGCTACTTGTGAAGCTCTGAAAGCACAACAAAATCAACCTGCTCCTCAGAAGGTAAATTCCAAGACCAAGAATGGAGAGAGTGCAATAGTTAACAGAGGAGGATTGAAGGGAGGAACAGAAGTCATGGATCATAATAAGGTGCAGAAACTGCAAAAGAAACCTGATGTGAGTCATTCCAAATTTAGATGTGAAGTCTGTAATGTCAATTGCCCTTGTCAGATTGCCTTGACCTCTCATAACAATGGGAAGAAGCATTTGGCTAAAATTAAAACTTTAATCTGA 1275 0.4016 MALLWFLKLALKFLHHFAWPLLALVYPLCASVQAIETDSNKETRDLISYWILLSLSHSQIDRRRLVHSRSRDPRTLILQIESNLRSLSWLIDPRVFQFWPYFKLMIIFWLIMPDFRRASYAYNNVIRTCISLNPQAVMCRLLNNWRKLFVKNDDFLLHVERYVNENGTEALDKLIASKNTTYKPDAEGTNAIRGIDNKETQQTNEKKPQTEHKAIEDLEVIEKKEIPAGKQNASPAMVETKGLVEKVKDKARILELPQSSTHKEVQKEWTCALCHVTTSSEKTLIDHIHGRKHKATFEALKAQQNQPAPQKVIKSDQAKEELKQKNIRKHKATCEALKAQQNQPAPQKVNSKTKNGESAIVNRGGLKGGTEVMDHNKVQKLQKKPDVSHSKFRCEVCNVNCPCQIALTSHNNGKKHLAKIKTLI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2042 424 Gene3D Classic Zinc Finger 246 299 - -
Aed10g2042 424 Gene3D Classic Zinc Finger 373 422 - -
Aed10g2042 424 SMART ZnF_U1_5 389 423 IPR003604 GO:0003676|GO:0008270
Aed10g2042 424 SMART ZnF_U1_5 266 300 IPR003604 GO:0003676|GO:0008270
Aed10g2042 424 Coils Coil 315 335 - -
Aed10g2042 424 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 55 - -
Aed10g2042 424 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 96 318 - -
Aed10g2042 424 MobiDBLite consensus disorder prediction 338 371 - -
Aed10g2042 424 SUPERFAMILY beta-beta-alpha zinc fingers 373 423 IPR036236 -
Aed10g2042 424 SUPERFAMILY beta-beta-alpha zinc fingers 262 303 IPR036236 -
Aed10g2042 424 Pfam Zinc-finger of C2H2 type 392 416 - -
Aed10g2042 424 Pfam Zinc-finger of C2H2 type 269 293 - -
Aed10g2042 424 MobiDBLite consensus disorder prediction 185 210 - -
Aed10g2042 424 MobiDBLite consensus disorder prediction 338 358 - -
Aed10g2042 424 Pfam TB2/DP1, HVA22 family 94 128 IPR004345 -
Aed10g2042 424 SMART c2h2final6 269 293 IPR013087 -
Aed10g2042 424 SMART c2h2final6 392 416 IPR013087 -
Aed10g2042 424 PANTHER HVA22-LIKE PROTEINS 1 55 IPR004345 -
Aed10g2042 424 PANTHER HVA22-LIKE PROTEINS 96 318 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2042 Aed-Chr10 24339466 24342515 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2042 - - gmx:100812073 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2042 10 24339466 24342515 Aed10g2042 10 24339466 24342515 ECH