Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00486 ATGCTCGCTGGAACCATCAATATTGGGGTAGCATGGTGGTTGTTGAACTCCATAAAGAACATATGTCATGACGATCTCCTTCCAGCAGACAGTCCCTGGACATGCCCAGGTGACCGTGTATTCTTTGATGCATCAGTTATTTGGGGCCTTGTGGGACCAAAGCGGATCTTTGGTTCTCTAGGAAACTACAGTGCATTGAATTGGTTTTTCCTTGGAGGTGCATTGGGTCCTATAATTGTTTGGTTATTGCACAAAGCATTTCCAAAAAAGTCATGGATTCCACTGATAAACCTCCCAGTTCTCCTAGGAGCAACTGCATATATGCCACCAGCAACACCATTGAACTACAATGCATGGATTTTGGTTGGGACAATTTTCAACTTCTTTATCTTCCGTTACAGAAAGAAGTGGTGGCAAAGGTACAACTATGTTCTGTCAGCGGCACTTGACAGCGGAGTTGCTTTTATGACGGTCTTGCTCTACTTCTCATTGGGTTTGGAAAACAAGAATATAAATTGGTGGGGAAATGATGGAGAACATTGTCCACTCGCAGTTTGCCCAACTGCAAAAGGCGTAATCGTTGATGGTTGTCCCGCAAAGTAA 603 0.4395 MLAGTINIGVAWWLLNSIKNICHDDLLPADSPWTCPGDRVFFDASVIWGLVGPKRIFGSLGNYSALNWFFLGGALGPIIVWLLHKAFPKKSWIPLINLPVLLGATAYMPPATPLNYNAWILVGTIFNFFIFRYRKKWWQRYNYVLSAALDSGVAFMTVLLYFSLGLENKNINWWGNDGEHCPLAVCPTAKGVIVDGCPAK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00486 200 Pfam OPT oligopeptide transporter protein 3 163 IPR004813 GO:0035673
Vimu2g00486 200 PANTHER ISP4 LIKE PROTEIN 2 198 IPR004648 GO:0055085
Vimu2g00486 200 NCBIfam OPT family oligopeptide transporter 3 166 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00486 Vimu-Chr2 2775937 2776539 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00486 1 200 Organic Solute Cotransporters AT5G64410 81.500 1.26e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00486 - - gmx:100786741 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00486 2 2775937 2776539 Vimu2g00486 2 2775937 2776539 ECH
Vimu2g00486 2 2775937 2776539 Vimu11g03402 11 55083458 55086541 PCT