Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05065 ATGAGCTTAGACACAGAGAAGCAGCCAGCACCCACAACCACAGAGGTGGTCGACGAAGATGAATTGTCACCCATTGAGGAGGTCCGGCTAACCGTGACCAACACCGACGACCCGACCCAACCCGTATGGACCTTCCGTATGTGGTTCCTGGGTCTTCTCTCATGTTCCCTCTTGTCCTTCCTCAACCAGTTCTTCGCTTACCGTACGGAGCCCCTCATTATAACTCTCATCACCGTTCAAGTCGCCACTCTCCCCATCGGCCATTTCATGGCCGCAGTTCTACCCAATACCAAGTTCAGAATCCCCGGGTTCGGGTCAAATGTATTCTCCTTCAACCCGGGTCCATTTAACATGAAGGAGCACGTCCTGATTACCATATTCGCCAATGCGGGGAGCGCATTCGGATCCGGGTCACCCTACGCGGTAGGTATCGTAAACATAATCAAAGCCTTTTACGGACGCAGCATCTCCTTTCATGCTTCCTGGCTTCTCATCATTACCACTCAGGTGCTAGGATACGGATGGGCCGGATTACTGAGGAAGTACGTGGTAGAACCGGCCCACATGTGGTGGCCCAGCACCCTCGTCCAGGTCTCACTTTTCCGAGCTTTGCATGAGAAAGATGACCACCGACTTTCACGGGCAAAGTTTTTCTTTATTGCACTAGTGTGCAGTTTTTCATGGTATGTGATCCCTGGATACTTCTTCACAACACTCACAAGCATATCATGGGTCTGTTGGATATTCTCCAAGTCAGTAACAGCTCAGCAGATAGGCTCAGGCATGAAAGGTTTGGGACTTGGAGCACTCACACTTGATTGGTCTACTGTGGCATCATTCTTGTTCAGCCCTCTTATCTCACCCTTCTTTGCCATTGTCAATGTTTTTGTGGGCTATGCATTGATAGTCTATGTTGTGATTCCTATTGCATATTGGGGCCTAAATGTGTACCATGCAAATAGGTTCCCCATTTTCTCCTCACATTTATTCACAGCCCAAGGTCAAAAGTACAACATATCTGCTATTGTCAATGACAAGTTTGAGCTAGATATTGCACAGTATCAAGAGCAAGGTAGAATTCATCTCAGTGTGTTTTTTGCTCTCACTTACGGCTTTGGATTTGCTACCATAGCATCTACCCTTACGCATGTTGCTTGCTTCTATGGAAGGGAGATTATGGAGCGCTACCGTGCTTCTTCCAAGGGAAAAGAAGATATCCACACAAAATTGATGAAAAGATACAAAGACATCCCTTCTTGGTGGTTTCATGCGTTGCTGGTTGTGACGCTTGCAGTTTCTCTCATACTATGCATCTTTCTAAATGACCAGGTTCAGATGCCGTGGTGGGGACTTCTCTTTGCTGGAGCCCTGGCTTTTGTATTTACCCTCCCCATTAGTATCATAACTGCCACCACAAACCAGACTCCAGGATTGAACATCATCACTGAGTATGTCTTTGGTCTCATTTACCCTGGAAGACCAATAGCAAATGTATGCTTCAAAACCTATGGCTACATTAGCATGGCACAGGCTGTCTCCTTCCTCAGTGATTTCAAGCTTGGACACTACATGAAAATCCCTCCAAGATCAATGTTCTTGGTTCAGTTCATAGGTACAATCCTTGCTGGAACCATCAACATTGGGGTAGCATGGTGGTTGCTGAACTCAATTGAGAATATATGTCATGATGATCTCCTTCCACCAGACAGTCCTTGGACATGTCCTGGTGACCGTGTTTTCTTTGATGCATCAGTTATTTGGGGTCTGGTAGGACCAAGACGGATCTTTGGTTCTCAAGGAAACTACAGTGCAATGAATTGGTTTTTCCTTGGAGGTGCAATAGGACCTATAATTGTTTGGCTGTTGCATAAAGCATTTCCCAAACAGTCATGGATTCCCCTAATTAACCTTCCAGTTCTCCTTGGAGCAACTGGAATGATGCCACCAGCAACACCATTGAACTACAATGCCTGGATTTTGGTTGGAACAATTTTCAATTTCTTTATCTTCCGTTACAGAAAGAAGTGGTGGCAGAGGTACAACTATGTTCTATCAGCAGCACTTGAAACTGGGGTTGCTTTTATGACTGTGCTGCTGTACTTTTCACTAAGTTTGGAAAACAAGAGTATTAGTTGGTGGGGAACTGAAGGCGAACATTGTCCACTGGCATCTTGCCCAACAGCAAAGGGCATAGTGGTTGATGGTTGCCCTGTAAACTAG 2220 0.4599 MSLDTEKQPAPTTTEVVDEDELSPIEEVRLTVTNTDDPTQPVWTFRMWFLGLLSCSLLSFLNQFFAYRTEPLIITLITVQVATLPIGHFMAAVLPNTKFRIPGFGSNVFSFNPGPFNMKEHVLITIFANAGSAFGSGSPYAVGIVNIIKAFYGRSISFHASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDDHRLSRAKFFFIALVCSFSWYVIPGYFFTTLTSISWVCWIFSKSVTAQQIGSGMKGLGLGALTLDWSTVASFLFSPLISPFFAIVNVFVGYALIVYVVIPIAYWGLNVYHANRFPIFSSHLFTAQGQKYNISAIVNDKFELDIAQYQEQGRIHLSVFFALTYGFGFATIASTLTHVACFYGREIMERYRASSKGKEDIHTKLMKRYKDIPSWWFHALLVVTLAVSLILCIFLNDQVQMPWWGLLFAGALAFVFTLPISIITATTNQTPGLNIITEYVFGLIYPGRPIANVCFKTYGYISMAQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTILAGTINIGVAWWLLNSIENICHDDLLPPDSPWTCPGDRVFFDASVIWGLVGPRRIFGSQGNYSAMNWFFLGGAIGPIIVWLLHKAFPKQSWIPLINLPVLLGATGMMPPATPLNYNAWILVGTIFNFFIFRYRKKWWQRYNYVLSAALETGVAFMTVLLYFSLSLENKSISWWGTEGEHCPLASCPTAKGIVVDGCPVN. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05065 739 NCBIfam small oligopeptide transporter, OPT family 22 707 IPR004648 GO:0055085
Seca6g05065 739 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g05065 739 Pfam OPT oligopeptide transporter protein 43 702 IPR004813 GO:0035673
Seca6g05065 739 PANTHER ISP4 LIKE PROTEIN 17 738 IPR004648 GO:0055085
Seca6g05065 739 NCBIfam OPT family oligopeptide transporter 26 704 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05065 Seca-Chr6 117910801 117918097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05065 12 739 Organic Solute Cotransporters AT5G64410 81.868 0.0 1266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05065 - - gmx:100811348 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05065 6 117910801 117918097 Seca6g05065 6 117910801 117918097 ECH
Seca6g05065 6 117910801 117918097 Seca12g05090 12 138595383 138600761 PCT