Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10689 ATGAATACATTCGATACAGAGAAAGTAACCACCACAATAAACCAAAACGAAGAAGAAGATGAAGATGAACTATCTCCCATTGAAGAAGTCCGTTTAACGGTAACAAACACCGACGACCATACTCAACCCGTATGGACTTTCCGCATGTGGTTTCTCGGTCTCATTTCATGCTCAATCCTTTCCTTCCTCAACCAATTCTTCGCGTACCGAACCGAGCCTCTCATCATCACTCTCATCTCCGTTCAGGTCGCGACGCTTCCAATCGGTCACTTCATGGCGGCGATTCTACCGAAGACGAAGTTTACTCTCCCCGGGTTCAGGTCGAAAGTGATGTCGTTTAACCCGGGTCCGTTTAACATGAAGGAACATGTGTTGATTACTATATTTGCGAATGCGGGAAGTGCGTTCGGATCCGGGTCGCCGTATGCGGTTGGGATTGTGAATATTATTAAAGCGTTTTATGGAAGGAGTATTTCTTTTCATGCTGCTTGGCTTCTCATTATTACTACTCAGGTTCTGGGATATGGATGGGCTGGGTTGCTGAGGAAGTATGTGGTGGAGCCAGCCCATATGTGGTGGCCCAGCACCCTTGTTCAGGTCTCACTTTTCCGAGCTTTGCATGAGAAAGATAATGACCACCACCAAATGTCAAGGGCAAAGTTTTTCTTTATTGCACTAGTATGCAGTTTTTCATGGTATGTGATCCCAGGATACTTGTTCACAACACTCACAAGCATATCATGGGTTTGTTGGGTATTCTCCAAGTCGGTCACAGCTCAGCAGATAGGCTCAGGCATGAAAGGCCTTGGAGTTGGGGCCCTTACACTTGATTGGTCTGCGGTGGCATCATTCTTGTTCAGCCCTCTTATCTCACCATTCTTTGCCATTGTCAATGTTTTTGTGGGCTATGCATTAATAGTCTATACTGTGATTCCCATTGCATATTGGGGCCTAGATGTTTACAATGCTAAAAGGTTTCCAATTTTCTCCTCTCACCTTTTCACTGCTGAAGGTCAAAAATACGACATATCTGCTATTGTCAATGACAAGTTTGAGCTAGATGTTGCAAAGTATACAGAGCAAGGTAGAATTCATCTAAGTGTGTTTTTCGCTCTCACCTACGGCTTTGGATTTGCAACCATAGCATCCACCCTTTCACATGTTGCTTGCTTCTATGGAAGGGAAATTATGGAGCGGTATCAAGCTTCTTCAAAGGGTAAAGAAGATATCCACACAAGATTGATGAAAAGGTACAAAGACATTCCTCCTTGGTGGTTTTACGCGTTGTTGGCTGTGACTCTTGCTGTTTCTCTCGCGCTATGCATCTTTCTCAATGACCAAATTCAGATGCCTTGGTGGGGACTTATCTTTGCCGGAGCTTTAGCTTTTGTGTTTACTCTCCCTATTAGCATCATCACTGCCACCACAAACCAGACACCAGGATTGAATATCATCACTGAGTATGTCTTTGGTTTGATTTACCCTGGAAGACCAATAGCAAATGTATGCTTCAAAACCTATGGTTACATTAGCATGGCACAAGCAGTCTCCTTCCTTAGTGATTTCAAGCTTGGACACTACATGAAAATCCCTCCAAGATCAATGTTCTTAGTTCAGTTCATAGGAACACTGCTTGCAGGAACCATCAACATCGGGGTAGCATGGTGGTTGCTAAACTCTATTGAGAATATATGTCATGATGATCTCCTTCCAGAAGGTAGTCCTTGGACATGCCCAGGTGACCGTGTTTTCTTCGATGCTTCGGTTATTTGGGGTCTGGTAGGACCAAAAAGGATATTTGGTTCTAAAGGAAACTACAGTGTAATGAATTGGTTTTTCCTTGGAGGTGCACTAGGACCAATAATTGTTTGGCTATTGCATAAAGCCTTTCCTAAACAATCATGGATTCCTTTGATTAACCTTCCAGTTCTCCTTGGAGCTACCGGATCGATGCCACCAGCAACACCATTGAACTACAATGCTTGGATTTTCTTCGGAACAGTTTTCAACTTCTTTGTGTTCCGTTACAGAAAGAAATGGTGGCAGAGGTACAACTATGTTCTATCAGCAGCACTTGATACAGGAGTTGCTTTTATGACTGTTTTGCTTTACTTTTCACTGAGTTTGGAAAATAGAAGTATTACTTGGTGGGGAACCAATGGTGAACATTGTCCATTGGCATCTTGTCCGACTGCAAAAGGCATATCGGCTCCTGGTTGCCCACCAAACTTGTGA 2235 0.4358 MNTFDTEKVTTTINQNEEEDEDELSPIEEVRLTVTNTDDHTQPVWTFRMWFLGLISCSILSFLNQFFAYRTEPLIITLISVQVATLPIGHFMAAILPKTKFTLPGFRSKVMSFNPGPFNMKEHVLITIFANAGSAFGSGSPYAVGIVNIIKAFYGRSISFHAAWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDNDHHQMSRAKFFFIALVCSFSWYVIPGYLFTTLTSISWVCWVFSKSVTAQQIGSGMKGLGVGALTLDWSAVASFLFSPLISPFFAIVNVFVGYALIVYTVIPIAYWGLDVYNAKRFPIFSSHLFTAEGQKYDISAIVNDKFELDVAKYTEQGRIHLSVFFALTYGFGFATIASTLSHVACFYGREIMERYQASSKGKEDIHTRLMKRYKDIPPWWFYALLAVTLAVSLALCIFLNDQIQMPWWGLIFAGALAFVFTLPISIITATTNQTPGLNIITEYVFGLIYPGRPIANVCFKTYGYISMAQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTLLAGTINIGVAWWLLNSIENICHDDLLPEGSPWTCPGDRVFFDASVIWGLVGPKRIFGSKGNYSVMNWFFLGGALGPIIVWLLHKAFPKQSWIPLINLPVLLGATGSMPPATPLNYNAWIFFGTVFNFFVFRYRKKWWQRYNYVLSAALDTGVAFMTVLLYFSLSLENRSITWWGTNGEHCPLASCPTAKGISAPGCPPNL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10689 744 NCBIfam OPT family oligopeptide transporter 28 708 IPR004813 GO:0035673
Vifa1g10689 744 NCBIfam small oligopeptide transporter, OPT family 24 711 IPR004648 GO:0055085
Vifa1g10689 744 PANTHER ISP4 LIKE PROTEIN 15 741 IPR004648 GO:0055085
Vifa1g10689 744 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g10689 744 Pfam OPT oligopeptide transporter protein 45 706 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10689 Vifa-Chr1 1796644516 1796650178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10689 16 741 Organic Solute Cotransporters AT5G64410 80.992 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10689 - - gmx:100811348 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10689 1 1796644516 1796650178 Vifa1g10689 1 1796644516 1796650178 ECH
Vifa1g10689 1 1796644516 1796650178 Vifa1g10690 1 1796644516 1796650178 PCT