Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00275 ATGAACTCTTTCGATACAGAGATAGCAACAACCGCAACAGGAAAACTACAGTTAGATGAAGAAGATGAAGAAGAAATATCTCCCATTGAAGAAGTTCGTTTAACCGTAACAAACACCGATGACCCGAATCTACCTGTATGGACTTTCCGTATGTGGTTCTTAGGTCTCATTTCATGTTCACTCTTATCATTTCTCAACCAATTCTTCGCTTACCGAACAGAACCGCTTATCATTACTCTCATCTCCGTTCAAGTAGCTACACTACCTATCGGTCATTTCATGGCGGCGGTTCTGCCGACGAGAAAATTTCGGATCGGGTCGAAACTAATGTCGTTGAACCCGGGTCCGTTTAATATGAAGGAACATGTGTTGATTACTATTTTTGCTAATGCTGGAAGTGCTTTCGGATCCGGGTCGCCTTATGCGGTTGGGATTGTGAATATCATTAAAGCGTTTTATGGACGGAGTATTTCGTTTCATGCTGCTTGGATTCTCATTATTACTACTCAGGTTCTGGGATACGGATGGGCTGGGTTACTGAGGAAGTATGTAGTGGAGCCGGCCCATATGTGGTGGCCCAGTACCCTTGTTCAGGTTTCACTTTTCCGAGCTTTGCATGAGAAAGACGACGACGACCACCGAATTTCGCGGGCAAAGTTTTTCTTTATTGCACTAGTATGCAGTTTTTCATGGTATGTGATCCCAGGATACTTGTTCACAACACTCTCAACCATATCATGGGTCTGTTGGGTATTCTCCAAGTCAGTCACAGCTCAGCAGTTGGGCTCAGGAATGAAAGGCCTTGGCATTGGTGCCCTTACACTTGATTGGTCTGTAGTGGCATCATTCTTGTTCAGTCCTCTTATCTCACCATTCTTTGCCATTGTCAATGTTTTTGTGGGCTTTGTATTAATACTCTATGTTGTGATTCCCACTGCATATTGGGGCCTAAATGTTTACAATGCTAAAACGTTTCCCATTTTCTCCTCTCATTTGTTCACTGCTCAAGGTCTAAAATACAACATATCTGCTATTGTTAATGACAAGTTTGAGCTAGATATTGCAAAGTATGAAGAGCAAGGTAAAATTCATCTAAGTGTGTTTTTCGCTCTCACTTATGGCTTTGGATTTGCCACCATAGCTTCCACCCTTTCGCATGTTGCTTGCTTCTATGGAAGGGAGATTATGGACCGGTATCGTGCTTCTTCTAAGGGTAAAGAAGATATCCATACAAAATTGATGAAAAGATACAAAGACATACCTTCTTGGTGGTTTTACGCGTTGCTGGTTGTGACACTTGCCGTTTCTCTCGCACTATGCATCTTTCTCAATGACCAAATTCAGATGCCTTGGTGGGGACTTCTCTTCGCTGCAGCTTTAGCTTTTGTATTCACTCTTCCTATTAGCATCATAACTGCCACCACAAATCAGACACCAGGATTGAACATCATTACCGAGTATGTCTTCGGTTTGATTTACCCTGGAAGACCAATAGCAAATGTATGCTTCAAAACCTATGGTTACATTAGCATGGCACAAGCGGTCTCATTCCTTAGCGATTTCAAGCTTGGACACTACATGAAAATCCCTCCAAGATCAATGTTCTTAGTTCAGTTCATAGGCACAATGCTTGCTGGAACCATCAACATTGGGGTAGCATGGTGGTTGCTAAACTCTATTGAGCACATATGTCATGATGATCTCCTTCCAGAAGGCAGTCCTTGGACATGTCCAGGTGACCGTGTTTTCTTCGATGCTTCGGTTATTTGGGGTCTAGTAGGACCAAAAAGGATCTTTGGTTCTAAAGGAAACTACAGTGCAATGAATTGGTTTTTCCTTGGAGGTGCAACAGGACCAATACTTGTTTGGCTATTGCATAAAGCATTTCCTAGACAGTCATGGATTCCTTTGATCAACCTTCCGGTTCTTCTTGGAGCTACCGGAATGATGCCACCAGCAACAGCATTGAACTACAATGCTTGGATTTTCTTTGGGACGGTTTTCAACTTCTTTGTGTTCCGTTACAGAAAGAAATGGTGGCAGAGATACAACTATGTTCTATCAGCAGCACTTGATACTGGAGTTGCTTTTATGACTGTTCTACTTTACTTTTCACTGAGTTTGGAAAACAGAAGTATTACTTGGTGGGGAACTGATGGCGAACATTGTCCATTAGCATCTTGCCCAACTGCAAAAGGCATACAGTTTGGTGATTGCCCGGTACAATAG 2229 0.4258 MNSFDTEIATTATGKLQLDEEDEEEISPIEEVRLTVTNTDDPNLPVWTFRMWFLGLISCSLLSFLNQFFAYRTEPLIITLISVQVATLPIGHFMAAVLPTRKFRIGSKLMSLNPGPFNMKEHVLITIFANAGSAFGSGSPYAVGIVNIIKAFYGRSISFHAAWILIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDDDDHRISRAKFFFIALVCSFSWYVIPGYLFTTLSTISWVCWVFSKSVTAQQLGSGMKGLGIGALTLDWSVVASFLFSPLISPFFAIVNVFVGFVLILYVVIPTAYWGLNVYNAKTFPIFSSHLFTAQGLKYNISAIVNDKFELDIAKYEEQGKIHLSVFFALTYGFGFATIASTLSHVACFYGREIMDRYRASSKGKEDIHTKLMKRYKDIPSWWFYALLVVTLAVSLALCIFLNDQIQMPWWGLLFAAALAFVFTLPISIITATTNQTPGLNIITEYVFGLIYPGRPIANVCFKTYGYISMAQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTMLAGTINIGVAWWLLNSIEHICHDDLLPEGSPWTCPGDRVFFDASVIWGLVGPKRIFGSKGNYSAMNWFFLGGATGPILVWLLHKAFPRQSWIPLINLPVLLGATGMMPPATALNYNAWIFFGTVFNFFVFRYRKKWWQRYNYVLSAALDTGVAFMTVLLYFSLSLENRSITWWGTDGEHCPLASCPTAKGIQFGDCPVQ 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00275 742 NCBIfam OPT family oligopeptide transporter 30 707 IPR004813 GO:0035673
Trre3g00275 742 NCBIfam small oligopeptide transporter, OPT family 25 710 IPR004648 GO:0055085
Trre3g00275 742 PANTHER ISP4 LIKE PROTEIN 19 741 IPR004648 GO:0055085
Trre3g00275 742 Pfam OPT oligopeptide transporter protein 47 705 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00275 Trre-Chr3 1840779 1847148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00275 19 742 Organic Solute Cotransporters AT5G64410 79.505 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00275 - - ahf:112714781 1311.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00275 3 1840779 1847148 Trre3g00275 3 1840779 1847148 ECH
Trre3g00275 3 1840779 1847148 Trre7g03902 7 47196325 47199878 PCT