Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3989 ATGTCCTTTCCATCACAAACCATCGTTTCTCCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTATGTCGTTGATACATTGAAACCTCTCGCAACTGCAATCACGTGCTTGATTTCAATGGCTTTTCTCAACTTGGCTCTCAAATGCTTTGACCATCTCGCATGGCCTATTCTTGCTCTGGGGTATCCTATGTGTGCTTCCGTACGAGCAATCGAGACTGATTCCATTAAGGAAATGAGGGATTTGATCTCATATTGGATACTTCTCTCATTATTATACCTATTTGAGTATGCTTTTATGTGGCTTCTCCAATGGTTCCAGTTCTGGCCTTATATGAAGCTAATGATTATCTTCTGGCTCATCATACCAGACTTCAGACGATCTTCATATGTCTATAGTAACCTTATACGTTCATACATCTCCATGAAACCGCAAACAGCCATATGCAGGTTAAGTAACTCAAGGAAGATTTTTGTCAAGAAAGTAAACTTTTTACTGCAAGCAGAGAAATATATAAGAGAGAATGGAACTGAAGCCTTAGAGAAACTCTTTGCTAGCAAGGAAGAGAAATATATAAAAGAGAGCGGAACTGAAGCCTTAGAGAAACTCATTGTTAGCAAGAACACAACAGATAAACCGGATGCAGAAACAAAGAATGCAATTAGGGATACTTCTAATAAAGAAATGCAACAGACAAATGGAAAAATTCTTCAAACAGAAGACAAAAAGATCATTCAGAAAAAAGAAATTCCTGCAGGCAAGCAAGATATTCCTTACATACCTATCCCTGCACCGAGTGAGAATGCTTCATCAACCATGTTGGAAACTAAAGGAGTTGCTGGGAAAGAAAAACTTGGTGAAGAATTTCCTCAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACTTGCACTGCTTATGAAGCGCAAAAAGCAAAGACTCAACCTGTTCCGCAGAAGCTGAGAATTTCTCTTCCCAAAGAGGAATGGAAACCGAAGAACATTACCAATCAGTTAAGTTACAAGACCAAGATTGGAGAGATTATTGTTAACACTGGTTTGAAGGGAGACGTAGTCATGGATCATAACAAGGATATTCCTTCCATGCCTAGCCTTGCACCAACTCAGATTGCTTCATCAACCATTGTTGAAATGAAAGGAATTGCAGGGAAAGGCAGAGCTGGGGAAGAGTTTCCTCGGAGTTCTACACATAAGGAAGTCCAGAAAGAGTGGACTTGCGCTTTATGTCAGGTAACAGTTTTGAGGGAGGAAGACTTGAATTCCCACCTACAAGGGAGGAAACATAGGGCTGCTGATGAAGCTATAAAAGCAAAGACTCAATCTGTTCCCCAGAAGCTGAGAAATTTTTTGCACAAAGAGGAATGGAAACAGAAGACCATTTCCAATCAGCTAAGTTACAATGCCAAGAATGGAGAGAGTATTGTTAACATTGATCAGAAGGGAAACGTAGTCATGGATCATAAGGTGAGAGAACTGCAAAAGAACCTGTATGAACCTGTTAGGATGAATTATTCCAAATTAAGATGTGAAGCCTGTAATGTCTGTTGCTCTACTGAGTTTGACTTGGCCTGTCACTTAAATGGGAGGAAGCACTTAGCAAATATTGTGGGTGTAGTTGAGTTTTGA 1647 0.4013 MSFPSQTIVSPSSSSSSSSSSYVVDTLKPLATAITCLISMAFLNLALKCFDHLAWPILALGYPMCASVRAIETDSIKEMRDLISYWILLSLLYLFEYAFMWLLQWFQFWPYMKLMIIFWLIIPDFRRSSYVYSNLIRSYISMKPQTAICRLSNSRKIFVKKVNFLLQAEKYIRENGTEALEKLFASKEEKYIKESGTEALEKLIVSKNTTDKPDAETKNAIRDTSNKEMQQTNGKILQTEDKKIIQKKEIPAGKQDIPYIPIPAPSENASSTMLETKGVAGKEKLGEEFPQSSTHKEVQKEWTCTAYEAQKAKTQPVPQKLRISLPKEEWKPKNITNQLSYKTKIGEIIVNTGLKGDVVMDHNKDIPSMPSLAPTQIASSTIVEMKGIAGKGRAGEEFPRSSTHKEVQKEWTCALCQVTVLREEDLNSHLQGRKHRAADEAIKAKTQSVPQKLRNFLHKEEWKQKTISNQLSYNAKNGESIVNIDQKGNVVMDHKVRELQKNLYEPVRMNYSKLRCEACNVCCSTEFDLACHLNGRKHLANIVGVVEF* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3989 548 Pfam TB2/DP1, HVA22 family 63 139 IPR004345 -
Lja4g3989 548 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 39 188 - -
Lja4g3989 548 Pfam Zinc-finger of C2H2 type 515 538 - -
Lja4g3989 548 Pfam Zinc-finger of C2H2 type 411 435 - -
Lja4g3989 548 SUPERFAMILY beta-beta-alpha zinc fingers 505 542 IPR036236 -
Lja4g3989 548 SMART c2h2final6 411 435 IPR013087 -
Lja4g3989 548 SMART c2h2final6 514 538 IPR013087 -
Lja4g3989 548 SMART ZnF_U1_5 408 442 IPR003604 GO:0003676|GO:0008270
Lja4g3989 548 SMART ZnF_U1_5 511 545 IPR003604 GO:0003676|GO:0008270
Lja4g3989 548 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 320 455 - -
Lja4g3989 548 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 189 308 - -
Lja4g3989 548 PANTHER HVA22-LIKE PROTEINS 189 308 IPR004345 -
Lja4g3989 548 Gene3D Classic Zinc Finger 396 439 - -
Lja4g3989 548 Gene3D Classic Zinc Finger 493 543 - -
Lja4g3989 548 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g3989 548 MobiDBLite consensus disorder prediction 211 234 - -
Lja4g3989 548 PANTHER HVA22-LIKE PROTEINS 320 455 IPR004345 -
Lja4g3989 548 PANTHER HVA22-LIKE PROTEINS 39 188 IPR004345 -
Lja4g3989 548 SUPERFAMILY beta-beta-alpha zinc fingers 393 445 IPR036236 -
Lja4g3989 548 ProSitePatterns Zinc finger C2H2 type domain signature. 413 435 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3989 Lja-Chr4 72960673 72965207 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3989 - - lja:Lj0g3v0280139.2 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3989 4 72960673 72965207 Lja4g3989 4 72960673 72965207 ECH