Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0716 . . . . . . . . Aev09g2503 . Ahy19g3295 . Aip09g03759 . . . . . Apr8g2450 . . . . . . . Bva13g00346 Bva14g00423 Car04g01455 . . . . . Dod06g0058 . . . . . . . . . . . . . . . . . Lal12g0401 . . . . . . . . . . . . . . . . . . . . . . Mal1g0511 . . . . . . . Mtr1g4078 . . . . . . Psa6g4992 . . . . . . . . . . . . . . . . . . . . Sto10g0317 . . . . . . . . . . . . . . . . . .
Vvi3g0717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0721 . . . . . . . . Aev09g2502 . Ahy19g3296 . Aip09g03760 . . . Amo19g4181 . . Apr7g0028 . . . . . . . Bva14g00424 . . . Cca06g02053 . . Dod06g0055 . . . . . . . . . . . . . . . . Lal13g0397 . . . . . . . . . . . . . . . . . . . . Lja5g0404 . . Mal1g0513 . . . . . . . Mtr1g4076 . . . . . . Psa6g4987 . . . . . . . . . . . . . . . . . . Ssu2g3177 . Sto10g0318 . Tpr1g0430 . . . . . . . . . . . . . . . .
Vvi3g0722 . . . . . . Aed1g1975 . Aev09g2501 . Ahy19g3297 . Aip09g03761 . . . Amo19g4182 . Apr8g2449 . . . . . . . Bva13g00347 . Car04g01454 . Cca02g02534 . . . Dod06g0054 . . . . . . . . . . . . . . . . . Lal12g0400 . . . . . . . . . . . . . . . . . . . Lja5g0405 . . Mal1g0517 . . . . . . . Mtr1g4073 . . . . . . Psa6g4974 . . . . . . . . . . . . . . . . . Ssu7g0466 . . Sto10g0319 . Tpr1g0435 . . . . . . . . . . . . . . Vra8g2436 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0713 Chr3 6263790 6264635 -
Vvi Vvi3g0714 Chr3 6267395 6267817 -
Vvi Vvi3g0715 Chr3 6269543 6269767 -
Vvi Vvi3g0716 Chr3 6282074 6283513 +
Aev Aev09g2503 Chr09 26717984 26719408 -
Ahy Ahy19g3295 Chr19 156009022 156010874 +
Aip Aip09g03759 Chr09 144389276 144391115 +
Apr Apr8g2450 Chr8 34570944 34573195 -
Bva Bva13g00346 Chr13 1623129 1624953 +
Bva Bva14g00423 Chr14 2074915 2076626 +
Car Car04g01455 Chr04 14765125 14771066 -
Dod Dod06g0058 Chr06 838896 841111 -
Lal Lal12g0401 Chr12 2850850 2852292 -
Mal Mal1g0511 Chr1 5842157 5843617 +
Mtr Mtr1g4078 Chr1 52350748 52352443 -
Psa Psa6g4992 Chr6 433138015 433140089 +
Sto Sto10g0317 Chr10 2523642 2527381 +
Vvi Vvi3g0717 Chr3 6304821 6305279 +
Vvi Vvi3g0718 Chr3 6310807 6311596 +
Vvi Vvi3g0719 Chr3 6314436 6314606 +
Vvi Vvi3g0720 Chr3 6314642 6315668 +
Vvi Vvi3g0721 Chr3 6338114 6339550 +
Aev Aev09g2502 Chr09 26710416 26711861 -
Ahy Ahy19g3296 Chr19 156038686 156040376 +
Aip Aip09g03760 Chr09 144416743 144418438 +
Amo Amo19g4181 Chr19 158408566 158410695 +
Apr Apr7g0028 Chr7 1529463 1530947 -
Bva Bva14g00424 Chr14 2079008 2080556 +
Cca Cca06g02053 Chr06 35768395 35769828 -
Dod Dod06g0055 Chr06 785599 787617 -
Lal Lal13g0397 Chr13 2495986 2497407 -
Lja Lja5g0404 Chr5 3604269 3607710 +
Mal Mal1g0513 Chr1 5861845 5863269 +
Mtr Mtr1g4076 Chr1 52340229 52341899 -
Psa Psa6g4987 Chr6 432649925 432651352 -
Ssu Ssu2g3177 Chr2 94088750 94090246 -
Sto Sto10g0318 Chr10 2537663 2541006 +
Tpr Tpr1g0430 Chr1 3663864 3665416 -
Vvi Vvi3g0722 Chr3 6357520 6364348 -
Aed Aed1g1975 Chr1 16765702 16767661 -
Aev Aev09g2501 Chr09 26704068 26708038 +
Ahy Ahy19g3297 Chr19 156042433 156047073 -
Aip Aip09g03761 Chr09 144420653 144425319 -
Amo Amo19g4182 Chr19 158453403 158458526 -
Apr Apr8g2449 Chr8 34560973 34566046 +
Bva Bva13g00347 Chr13 1626290 1629582 -
Car Car04g01454 Chr04 14756831 14761084 +
Cca Cca02g02534 Chr02 46506914 46515301 +
Dod Dod06g0054 Chr06 778813 785099 +
Lal Lal12g0400 Chr12 2842645 2850425 +
Lja Lja5g0405 Chr5 3610456 3614977 -
Mal Mal1g0517 Chr1 5895226 5905301 -
Mtr Mtr1g4073 Chr1 52315036 52320860 -
Psa Psa6g4974 Chr6 432375826 432380739 -
Ssu Ssu7g0466 Chr7 8833377 8836175 +
Sto Sto10g0319 Chr10 2548022 2553844 -
Tpr Tpr1g0435 Chr1 3697737 3702210 -
Vra Vra8g2436 Chr8 42422806 42429605 +