Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3503 ATGAAAATCCTCACTAGCTTAGGAATAATATTATTGTTTCTCAATGTCATTCAAGTTACTTGCCAGGCGATGCGGCACCATAAGTTTGTGGTGAGAGATGCTTCCTTCACAAAACTTTGCAGCACAAAGAATATCTTAACAGTAAATGGAGAATTTCCAGGGCCAACATTGTATGTTACGAAAGGAGAAAGCATAATTGTTGATGTGTATAACAGAGCTAACTATAACATCACCATTCACTGGCATGGAGTGAACCAACCAAGATATCCATGGTCTGATGGCCCTGAATTCATRACTCAGTGTCCCATTCAACCTGGTGCTATGTTCTCTCAAAAGGTTATCTTTTCTGAAGAGGAAGGCACACTTTGGTGGCATGCTCATAGTGATTGGTCTCGTGCTACTGTTCATGGTGCTATTGTCATTCAACCCAAGCCTGGACATACATATCCATTTCCAAAGCCAGATAGAGAGGTTCCAATGATATTAGGTGAATGGTGGAAGCAAGATGTTGTCAAAGTTTTTGATGATCTTGTTTCAACTGGAGCAGATGCTGCCATCTCTGATTCTTACACTATCAATGGTCAACCTGGTGATCTTCATCCATGTTCTGCCAATGAGACCTTCAAACTAAATGTGGAATATGGCAAGACTTATCTTCTGAGAATGATCAATGCTGCAATGCAAGACCTTCTCTTCTTTGCAATTGCTAAACATCAATTGACAGTGGTGGGAAGCGATGGAAGCTATGTGAAACCATTCAAAGTGGATTACATAACAATATCACCAGGTCAAACCATGGATGTGTTGGTTCAAGCTAATCAACCTTTGGATCAATATTACATGGCTGCCAAAGCCTATTCAAGTGCTTTCAATGTTAGATTTGATAACACAACAACCACTGCTATTCTTCAATACAAGAAGGGAATAAGCACTCCTCACATGCCTTCACTTCCATCTTTCAATGACACCAATTCCTCTGTCAACATCATAACTCAAATGAGAAGCTTGGCAGATGAAGCACATCCAATTAACGTGCCATTGAACATAACAACCAATCTGTTCTACACAGTTTCAGTTAACTCATTACCATGTCCAAATGCTACAATCTGCAAAGGCCCTCGTGGAAATAACCGATTTGCAGCAAGCATGAACAACATCAGCTTCCAATTTCTACCAAAAAATAACAACGTTAACATCTTGCAGGCTTATTATAACAATATCAGTGGTGTGTTCACTGAAAATTTTCCAGATGTTCCACCACTACTATTTAATTTCACTGCTTCCAATTTGTCCACATTTCTTAGAACTCCATCGGTAGATACAGAGGTGAAGGTGGTTGAGTATGGGTCCACGGTGGAGCTTGTTCTTCAAGGAACTAATTTGCTGGCTGGTACTGAGCATCCAATGCACTTTCATGGTCATAGTTTCTACGTAGTTGGATGGGGATTTGGAAATTATAACAAAGACAAAGATCCTTTCACATATAATCTCGTTGATCCTCCTTATCAGAATACAGTGGCTGTACCTAAAAATGGTTGGGTAGCCATAAGATTTCAGGCCAAAAATCCAGGTGTATGGTTCATGCACTGTCATTTAGAGCGACATGTAAGTTGGGGCATGGCTATGACTTTCATCGTCAAAAATGGTAACAATCCTGGACAACAAATGCTGCCAACCCCTCCAGACATGCCACCCTGCAACTAA 1704 0.4043 MKILTSLGIILLFLNVIQVTCQAMRHHKFVVRDASFTKLCSTKNILTVNGEFPGPTLYVTKGESIIVDVYNRANYNITIHWHGVNQPRYPWSDGPEFXTQCPIQPGAMFSQKVIFSEEEGTLWWHAHSDWSRATVHGAIVIQPKPGHTYPFPKPDREVPMILGEWWKQDVVKVFDDLVSTGADAAISDSYTINGQPGDLHPCSANETFKLNVEYGKTYLLRMINAAMQDLLFFAIAKHQLTVVGSDGSYVKPFKVDYITISPGQTMDVLVQANQPLDQYYMAAKAYSSAFNVRFDNTTTTAILQYKKGISTPHMPSLPSFNDTNSSVNIITQMRSLADEAHPINVPLNITTNLFYTVSVNSLPCPNATICKGPRGNNRFAASMNNISFQFLPKNNNVNILQAYYNNISGVFTENFPDVPPLLFNFTASNLSTFLRTPSVDTEVKVVEYGSTVELVLQGTNLLAGTEHPMHFHGHSFYVVGWGFGNYNKDKDPFTYNLVDPPYQNTVAVPKNGWVAIRFQAKNPGVWFMHCHLERHVSWGMAMTFIVKNGNNPGQQMLPTPPDMPPCN* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3503 567 Gene3D - 154 338 IPR008972 -
Amo19g3503 567 ProSitePatterns Multicopper oxidases signature 2. 529 540 IPR002355 GO:0005507
Amo19g3503 567 CDD CuRO_3_LCC_plant 410 549 IPR034289 GO:0005507
Amo19g3503 567 Gene3D - 370 567 IPR008972 -
Amo19g3503 567 CDD CuRO_2_LCC_plant 158 305 IPR034285 -
Amo19g3503 567 SUPERFAMILY Cupredoxins 24 167 IPR008972 -
Amo19g3503 567 CDD CuRO_1_LCC_plant 27 143 IPR034288 GO:0005507
Amo19g3503 567 ProSitePatterns Multicopper oxidases signature 1. 524 544 IPR033138 -
Amo19g3503 567 Gene3D - 22 146 IPR008972 -
Amo19g3503 567 TIGRFAM laccase: laccase 24 566 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo19g3503 567 PANTHER MULTI-COPPER OXIDASE 12 566 IPR045087 -
Amo19g3503 567 Pfam Multicopper oxidase 417 549 IPR011706 GO:0005507|GO:0016491
Amo19g3503 567 SUPERFAMILY Cupredoxins 151 331 IPR008972 -
Amo19g3503 567 Pfam Multicopper oxidase 157 307 IPR001117 -
Amo19g3503 567 Pfam Multicopper oxidase 33 144 IPR011707 GO:0005507
Amo19g3503 567 SUPERFAMILY Cupredoxins 373 565 IPR008972 -
Amo19g3503 567 PANTHER LACCASE 12 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3503 Amo-Chr19 148911411 148919297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3503 K05909 - qsu:112034097 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3503 19 148911411 148919297 Amo19g3503 19 148911411 148919297 ECH
Amo19g3503 19 148911411 148919297 Amo19g3503 19 148911411 148919297 PCT