Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1480 ATGGAGTTAATAAAGAAGAAGAAGATCTTGCTGTTAGAGCTTCTAGGGTTTCTGATATTGAATGTGCTCACATTCTGCATGGCTGCCAAGCATATCGCTACTGTTGATTGGATTGTCAAGGAAACTTCATACACTCGGCTGTGCAGCACCAAGAAGATCCTGACTGTAAATGGACTATTTCCTGGGCCACCTATGTATATGCGCAGGGGAGATCGGCTCAACATAAATGTTCGAAATAAAGGAAAGTACAATGTCACCATTCACTGGCATGGAGTGAAGCAACTCAGGAATCCATGGTCGGATGGACCAAACTACGTGACACAGTGCCCAATCAAACCAGGAGCAAATTTCACTTATGAAATCGTTTTGTCAAACGAGGAAGGAACCCTTTGGTGGCATGCCCACAGCGACTGGTCCCGCGCCACTGTCCATGGCGCACTCATTGTTCTCCCTCAACTTGGAAAAAGTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAGCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAAGTGGTGCGGAACCCAATAAATCGGACGCTTTCACCATTAATGGTCAACCAGGAGATCTATACAATTGTTCAAAACAAGGGACGTTCAAACTGGTGGTTGATTATGGGAAAACTTATCTTCTTCGCATCATCAATTCTATTATGAACGAGGAAATGTTCTTCATGGTTGCTAAGCATAGCCTGACTGTTGTTGGTACAGATGGGGCTTATATTAAACCCATAAAAACAAGCTATATCATGATAACCCCGGGACAGACAATGGATGTCCTTATCACAGCAAATCAGGCTCCTAGTCACTACTATATAGCATCCAGGGCATATGCTGGGGTAGTGTATGATAATACTACCACAACTGCAATAGTGCAATATAGTGGAAAATACACTGCCCCATCAACACCTTCATTTCCCAATCTTCCCAATTACACTGACACCAACGCAGTAACAAATTTTACTAGGCGCCTTAGGGCCCTAGCCACCAAAGACTACCCGGTAGATGTTCCACAACATGTTGATACCCGAATGTATATCACAATTTCTGTGAATACTTTGCCATGCGATGACAATTCATGTGATGGACCCAATGGCTCAAGGGTTTCTGCGAGCTTGAACAACATAAGTTTCGTGGAGCCATCAATTGATGTGTTACAAGCCTACTACAAGAGAATTAAGCATGTTTACGAATCCGATTTTCCGAATGAGCCCCCTTACTATTTCAACTTCACCGGGGACAACTTGCCGGACACTTTATTGACACCAGACCAGGGGACTAAGGCAAAAGTTTTGGATTATAATTCCACTGTGGAGATAGTGTTCCAAGGGACTAATGTGCAGAATGCAGCCGAGAATCATCCAATGCATTTGCATGGGTACAGCTTTTATCTAGTGGGATATGGTTTTGGGAACTTTAACAAGAAGACTGATCGGAAAAAATTCAATTTGGTTGATCCGCCGGAGGTCAATACCATTGGAGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAGGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGACACCGTTCTAATTGTGAAGAATGGAAGGACCAGATTAAGTAGTATGCTGCCACCACCTCGTCAATTAAATCCTTGTTGA 1710 0.4368 MELIKKKKILLLELLGFLILNVLTFCMAAKHIATVDWIVKETSYTRLCSTKKILTVNGLFPGPPMYMRRGDRLNINVRNKGKYNVTIHWHGVKQLRNPWSDGPNYVTQCPIKPGANFTYEIVLSNEEGTLWWHAHSDWSRATVHGALIVLPQLGKSYPFAKPHKEFPIVLASWFKGDVMEIIETALESGAEPNKSDAFTINGQPGDLYNCSKQGTFKLVVDYGKTYLLRIINSIMNEEMFFMVAKHSLTVVGTDGAYIKPIKTSYIMITPGQTMDVLITANQAPSHYYIASRAYAGVVYDNTTTTAIVQYSGKYTAPSTPSFPNLPNYTDTNAVTNFTRRLRALATKDYPVDVPQHVDTRMYITISVNTLPCDDNSCDGPNGSRVSASLNNISFVEPSIDVLQAYYKRIKHVYESDFPNEPPYYFNFTGDNLPDTLLTPDQGTKAKVLDYNSTVEIVFQGTNVQNAAENHPMHLHGYSFYLVGYGFGNFNKKTDRKKFNLVDPPEVNTIGVPTNGWAAIRFRADNPGVWFMHCHLERHSSWGMDTVLIVKNGRTRLSSMLPPPRQLNPC* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1480 569 Gene3D - 24 151 IPR008972 -
Vvi18g1480 569 CDD CuRO_2_LCC_plant 166 310 IPR034285 -
Vvi18g1480 569 Pfam Multicopper oxidase 419 551 IPR011706 GO:0005507|GO:0016491
Vvi18g1480 569 CDD CuRO_3_LCC_plant 412 552 IPR034289 GO:0005507
Vvi18g1480 569 Gene3D - 374 569 IPR008972 -
Vvi18g1480 569 Pfam Multicopper oxidase 165 312 IPR001117 -
Vvi18g1480 569 PANTHER MULTI-COPPER OXIDASE 29 554 IPR045087 -
Vvi18g1480 569 SUPERFAMILY Cupredoxins 28 174 IPR008972 -
Vvi18g1480 569 Pfam Multicopper oxidase 39 151 IPR011707 GO:0005507
Vvi18g1480 569 SUPERFAMILY Cupredoxins 159 345 IPR008972 -
Vvi18g1480 569 NCBIfam laccase 35 569 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1480 569 SUPERFAMILY Cupredoxins 356 566 IPR008972 -
Vvi18g1480 569 CDD CuRO_1_LCC_plant 36 151 IPR034288 GO:0005507
Vvi18g1480 569 ProSitePatterns Multicopper oxidases signature 2. 532 543 IPR002355 GO:0005507
Vvi18g1480 569 Gene3D - 163 347 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1480 Vvi-Chr18 18330249 18333768 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1480 K05909 - vvi:100240827 1165.21