Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0948 ATGAAAATGTCTTTTGGCAAGAAAATGCTCCTCCAACTTCTGTGGTGTATTTCCTTGATTGGTCTTAGTTCCCAAACACCGGGTCATTACAATTTTGTTGTGAAAGAGGCCAATTATACAAGACTCTGCTCCACAAAAAGCATATTGACAGTGAATGGAAGATTTCCAGGGCCAACCATAAGAGTCCACAAGGGTGACACAATCTATGTTAATGTTTACAACCAGGGCAGATACAACATCACCTTACACTGGCATGGAGTGAAGCAGCCAAGGAATCCATGGACAGATGGCCCTGAATACATCACTCAGTGCCCCATCCAACCAGGAGGGAGGTTCAGGCAGAAGGTGGTTTTTTCTACAGAGGAAGGGACCTTGTGGTGGCATGCTCATAGTGATTGGTCAAGAGCCACTGTCCATGGTGCTATCATTATCTATCCAAGAAAGAATAGTACCTACCCTTTTCCCAAACCTGTTGCAGAGGTGCCCATTATATTTGGAGAATGGTGGAAGAGTGACATCAAGGAGGTCTATACAGAATTTATTGAAAGTGGAGGAGGACCAAACATATCTGATGCTATCACTATAAATGGTCAACCCGGGGACCTATATCCTTGCTCAAGATCAGAAACATTCAAGTTAAATGTAGACCAAGGCAGGACTTATCTTCTCCGACTTGTTAATGCCGCAATGAATCTCATTCTCTTTTTCTCCGTTTCCAAACACAACCTCACTCTTGTTGGTCATGATGGTGTGTACACAAAGCCATTGACAAGTGATTACATTTGTATAGCACCAGGACAAACCATGGATGTATTGTTGCGTGCCAACCAAGAGCCTAATCACTATTACATGGCTGCAAGGGCATATTCAAGTGGAATTGGAGTTGCCTTTGATAACACCACAACCACTGCTAGAGTCCAATACAGTGGCAATTACACTCCACCCTCATCTCCTTCATTACCTTACCTTCCCAACTATAATGACACACAATCAGCATTTGACTTCATTAGAAGCATTAGGGGCGATCCTAGGAAATCCCCCCGCAAAGTCCCAAAAGATTGCACAGTTAACATGGAGACCACAATTTCTGTTAACACTTTTCCATGCCCCAGAGGCCAATCATGCCAAGGACCAAATGGAACCAGATTTGCTGCTAGCATGAACAACATAAGCTTTGTAGCCCCTAGTATTGACATATTAGAAGCCTACTACTACCACATCAATGGGGTATACAGGAAGGGATTTCCTAAGTTTCCACCATTCATATTTAACTTCACTGCTGATGTCTTGCCTCTAGAACTAAATATTCCAAAGCGAGGGACTAAGGCTAAGGTTCTGAAGTATGGTTCAACAGTGGAACTTGTTATCCAGGGGACAAATTTGGTTGGAGGGATAGACCATCCTATGCATTTGCATGGATTCAGTTTCCATGTTGTTGGATATGGTTTTGGAAATTTCAACATGAGCAAGGACCGAAAGAATTTCAATCTCATTGATCCTCCTCTTCTGAATACAGTGATTGTGCCAATCAAGGGCTGGGCTGCCATTAGATTCTGGGCTACCAACCCTGGAGTATGGTTCATGCACTGTCATCTAGAACGCCACCTCTCTTGGGGGATGGAGACTGTGTTTATTGTGAAGAATGGCAAACACTCAAATGAAACATTGCCACCTCCACCACCAGATATGCCCCCTTGTTGA 1701 0.4356 MKMSFGKKMLLQLLWCISLIGLSSQTPGHYNFVVKEANYTRLCSTKSILTVNGRFPGPTIRVHKGDTIYVNVYNQGRYNITLHWHGVKQPRNPWTDGPEYITQCPIQPGGRFRQKVVFSTEEGTLWWHAHSDWSRATVHGAIIIYPRKNSTYPFPKPVAEVPIIFGEWWKSDIKEVYTEFIESGGGPNISDAITINGQPGDLYPCSRSETFKLNVDQGRTYLLRLVNAAMNLILFFSVSKHNLTLVGHDGVYTKPLTSDYICIAPGQTMDVLLRANQEPNHYYMAARAYSSGIGVAFDNTTTTARVQYSGNYTPPSSPSLPYLPNYNDTQSAFDFIRSIRGDPRKSPRKVPKDCTVNMETTISVNTFPCPRGQSCQGPNGTRFAASMNNISFVAPSIDILEAYYYHINGVYRKGFPKFPPFIFNFTADVLPLELNIPKRGTKAKVLKYGSTVELVIQGTNLVGGIDHPMHLHGFSFHVVGYGFGNFNMSKDRKNFNLIDPPLLNTVIVPIKGWAAIRFWATNPGVWFMHCHLERHLSWGMETVFIVKNGKHSNETLPPPPPDMPPC* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0948 566 CDD CuRO_3_LCC_plant 410 549 IPR034289 GO:0005507
Dod06g0948 566 Gene3D - 158 343 IPR008972 -
Dod06g0948 566 Gene3D - 28 155 IPR008972 -
Dod06g0948 566 SUPERFAMILY Cupredoxins 29 170 IPR008972 -
Dod06g0948 566 ProSitePatterns Multicopper oxidases signature 1. 524 544 IPR033138 -
Dod06g0948 566 Pfam Multicopper oxidase 160 311 IPR001117 -
Dod06g0948 566 Pfam Multicopper oxidase 436 549 IPR011706 GO:0005507|GO:0016491
Dod06g0948 566 CDD CuRO_2_LCC_plant 161 308 IPR034285 -
Dod06g0948 566 ProSitePatterns Multicopper oxidases signature 2. 529 540 IPR002355 GO:0005507
Dod06g0948 566 SUPERFAMILY Cupredoxins 346 566 IPR008972 -
Dod06g0948 566 CDD CuRO_1_LCC_plant 30 146 IPR034288 GO:0005507
Dod06g0948 566 PANTHER MULTI-COPPER OXIDASE 34 566 IPR045087 -
Dod06g0948 566 PANTHER LACCASE-15 34 566 - -
Dod06g0948 566 SUPERFAMILY Cupredoxins 155 330 IPR008972 -
Dod06g0948 566 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507
Dod06g0948 566 Gene3D - 373 566 IPR008972 -
Dod06g0948 566 TIGRFAM laccase: laccase 29 566 IPR017761 GO:0046274|GO:0048046|GO:0052716
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0948 Dod-Chr6 11987406 11990585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0948 K05909 K19791 gmx:100817468 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0948 06 11987406 11990585 Dod06g0948 06 11987406 11990585 ECH
Dod02g2846 02 60699667 60703256 Dod06g0948 06 11987406 11990585 PCT