Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1962 ATGTCGTTCGGCAAGAAACTGTTCCTCCAAATTCTGTGGTGGTTTTCCTTGATCGGTCTTAGTTCCCAAATACGGAGTCATTACAGTTTTGTTGTGAGAGAGGCCAATTATACGAGACTCTGTTCGACAAAAAGCATATTGACAGTGAATGGAAATTTTCCAGGACCAACTATCAAAGTCCACAGAGGAGAAACAATCTTTGTTAATGTTTATAACAAGGGCAACTACAATATCACTTTGCACTGGCATGGAGTGAAGCAGCCAAGGAATCCATGGACAGATGGTCCTGCATACATTACTCAGTGCCCTATCCAACCTGGAAGGAGATTCAGACAGAAGTTGATTTTTTCTACAGAGGAAGGGACCATATGGTGGCATGCTCATAGTGACTGGTCAAGGGCCACTATTCATGGGGCTATCTATGTCTATCCAACCAAGAATACACCTTACCCTTTTCCCAAAGCTCATGCAGAGATTCCCATCATATTTAGTGAATGGTGGAAGAGTGATATTAATGAGGTCTTCACACAATTTATTGAATCTGGAGGAGGTCCAAATATATCTGATGCTCTCACGATAAATGGTCAACCCGGGGATTTGTACCCTTGCTCAATGACAGAAACGTTCGAGTTTCATGTAGAGCAAGGCAGGACTTATCTTCTCCGTGTTGTCAATGCGGCAATGAATCTCATTCTTTTCTTCTCTGTTTCAAAACACAACCTCACTGTTGTTGGTGCTGATGGTATGTTAACCAAGCCATTGACAAGGGAATACATTTGCATATCACCGGGACAAACAATGGATGTGTTGTTGCATGCCAACCAAGAACCTGATCACTATTATCTGGCTGCAAGGGCATATTCAAGTGGTGTTGGTGTTGCCTTTGATAACACAACAACCACTGCTAGAGTAAAGTACAGTGGTAATTACACTCCTCCTTCATCTCCTTCATTGCCTAACCTTCCAGACTTTAACGACACGCCTGCGGTGTTGGACTTCATTACAAGCTTGAGAGGCTTACCTGAGAGATACCCTCGCCAGGTTCCAACAAACATCACAACTCAAATAGTGACCACTATTTCTGTTAACACTTTGCCATGCCCAAATGGCAGAACCTGCCAGGGACCAAATGGAACCATTTTCGCTGCTAGCATGAACAACATAAGTTTTGACACCCCCAACATTGACATACTAAAAGCTTATTACTATCATATCAATGGGGTATTTAAACCGGGATTTCCTAGATTTCCACCCTTTATATTTAACTTCACTGGGGATTTTTTGCCTATAACATTGAATATACCAAAGCAAGGGACTAGGGTTAATGTACTGAATTATGGTGCAACGGTTGAAATTGTATTCCAAGGGACAAACGTTATTGCAGGGATAGACCATCCTATGCATCTCCATGGATTCAGTTTCCATGTTGTTGGATATGGGTTAGGCAATTTCAACCAAAGCAAGGACCCCAAGAATTTCAATCTCGTGGATCCTCCTTATTTGAATACAGTGATTGTGCCTGTAAATGGTTGGGCTGCTGTTAGGTTTGTGGCTACCAACCCTGGAGTATGGTTCATGCACTGCCATCTGGAACGCCACCAAGTTTGGGGCATGGAGACGGTGTTTATTGTGAAGAATGGAAAGGCTTCAAATGAAACGTTACCACCACCACCGCCAGATATGCCCCTCTGTTGA 1695 0.4295 MSFGKKLFLQILWWFSLIGLSSQIRSHYSFVVREANYTRLCSTKSILTVNGNFPGPTIKVHRGETIFVNVYNKGNYNITLHWHGVKQPRNPWTDGPAYITQCPIQPGRRFRQKLIFSTEEGTIWWHAHSDWSRATIHGAIYVYPTKNTPYPFPKAHAEIPIIFSEWWKSDINEVFTQFIESGGGPNISDALTINGQPGDLYPCSMTETFEFHVEQGRTYLLRVVNAAMNLILFFSVSKHNLTVVGADGMLTKPLTREYICISPGQTMDVLLHANQEPDHYYLAARAYSSGVGVAFDNTTTTARVKYSGNYTPPSSPSLPNLPDFNDTPAVLDFITSLRGLPERYPRQVPTNITTQIVTTISVNTLPCPNGRTCQGPNGTIFAASMNNISFDTPNIDILKAYYYHINGVFKPGFPRFPPFIFNFTGDFLPITLNIPKQGTRVNVLNYGATVEIVFQGTNVIAGIDHPMHLHGFSFHVVGYGLGNFNQSKDPKNFNLVDPPYLNTVIVPVNGWAAVRFVATNPGVWFMHCHLERHQVWGMETVFIVKNGKASNETLPPPPPDMPLC* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1962 564 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Gso10g1962 564 Pfam Multicopper oxidase 159 309 IPR001117 -
Gso10g1962 564 Gene3D - 371 564 IPR008972 -
Gso10g1962 564 TIGRFAM laccase: laccase 26 564 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso10g1962 564 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507
Gso10g1962 564 ProSitePatterns Multicopper oxidases signature 1. 522 542 IPR033138 -
Gso10g1962 564 SUPERFAMILY Cupredoxins 343 564 IPR008972 -
Gso10g1962 564 CDD CuRO_3_LCC_plant 408 547 IPR034289 GO:0005507
Gso10g1962 564 Gene3D - 154 340 IPR008972 -
Gso10g1962 564 SUPERFAMILY Cupredoxins 152 341 IPR008972 -
Gso10g1962 564 PANTHER MULTI-COPPER OXIDASE 31 564 IPR045087 -
Gso10g1962 564 PANTHER LACCASE-15 31 564 - -
Gso10g1962 564 SUPERFAMILY Cupredoxins 24 168 IPR008972 -
Gso10g1962 564 CDD CuRO_2_LCC_plant 159 306 IPR034285 -
Gso10g1962 564 Pfam Multicopper oxidase 433 547 IPR011706 GO:0005507|GO:0016491
Gso10g1962 564 ProSitePatterns Multicopper oxidases signature 2. 527 538 IPR002355 GO:0005507
Gso10g1962 564 Gene3D - 20 144 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1962 Gso-Chr10 46636855 46640317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1962 K05909 K19791 gmx:100817468 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1962 10 46636855 46640317 Gso10g1962 10 46636855 46640317 ECH
Gso20g1394 20 44096861 44100280 Gso10g1962 10 46636855 46640317 GST