Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1476 ATGAGGAGTGCTCAAGCTCAGACTGATCTTGCAAGTGGAAGACTATGGTCTCAGTTGTTGCGTTTCAAACAAGAGGGATTTCTACTCGGTGCTGGGAGCCCTTCAGGCTCAGACGTGCATGTTTCTTCCAGTAGCATTGTGCAAGGGCATGCTTACTCGTTGTTGCAAGTAAGAGAGGTAGACGGCCACAAGCTTGTTCAGGTTCGAAATCCATGGACAAATGAGGTTGAGTGGAATGGCTTTTGGGCAGACTCATCACCTGAGTGGACATAA 273 0.4835 MRSAQAQTDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHVSSSSIVQGHAYSLLQVREVDGHKLVQVRNPWTNEVEWNGFWADSSPEWT* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1476 90 PANTHER CALPAIN 9 90 - -
Vvi18g1476 90 Gene3D Cysteine proteinases 3 90 - -
Vvi18g1476 90 Pfam Calpain family cysteine protease 11 89 IPR001300 GO:0004198|GO:0006508
Vvi18g1476 90 ProSiteProfiles Cysteine proteinase, calpain-type, catalytic domain profile. 1 90 IPR001300 GO:0004198|GO:0006508
Vvi18g1476 90 SUPERFAMILY Cysteine proteinases 11 90 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1476 Vvi-Chr18 18272469 18272741 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1476 K25378 - vvi:100244915 165.622