Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01442 ATGAAAATGTGGCTTGGCAAGAAAATTATCTTCCTTCAAACTCTGCTTTGTTTTTCCATAGTTGGAACCAATTCCCATGGATTGAAGGAATACCATTTTGTTCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCcatattgacagtgaatggacaatttccagggccaactgttagagcctactatggtgaaacgatatatgtcaatgttcacaacaagggaaaatacaacatcaccttgcactgGCATGGAGTGAAACAACCAAGGAATCCATGGTCAGATGGCCCTGAATACATCACCCAGTGCCCCATCAAACCTGGTGGGAAATTCAGGCAGATGTTGATTTTTTCTATTGAGGAAGGAACCATATGGTGGCATGCTCATAGTGACTGGGCAAGAGCCACTGTCCATGGAGCTATCTATATTTATCCAAGAAAGGGTGAATCCTACCCTTTTCCCACACCTGATGAAGAAGTGCCTATTGTATTAGGAGAATGGTGGAAGAGTGATGTCAGCGATGTGTATGAGGAATTTCTCAGAAATGGAGGATCCCCAAATGAATCTGATGCTATCACAATAAATGGTCAACCTGGTGATCTCTATCCTTGCTCCAAATCAGAAACATTCAAGTTAAATGTGCACTATGGCAAGACTTATCATCTGCGCATGGTCAATGCTGCAATGAATCTCGTTCTCTTTTTTGCCGTTTCAAAGCACAATCTCACAGTTGTTGGTGTTGATAGTGCCTACTCTAAGCCATTAACAAGAGATTACATATGCATAGCTCCAGGACAAACAGCTGATGTATTATTGCATGCCAACCAAGAGCCTAATGACTACTACATGGCTGCAAGGGCATATTCAAGTGCACTTGGAGTTGCCTTTAATAATGGCATAACCACAGCTAGGATCCACTATCATGAGAATCATGCTCCAAACAAATCTCCTTCATTACCTTATCTCCCTCTTTACAACGACACAAAAGCAGTTTTTGACTACTATGTTAGCATTAAGGGCTTAAATGAAGCAGACCCCTATCAAGTCCCTACAAATATCACCACTCATATGCTAACCACCCTTTCAATTAACACATTTCCATGCCCTGAAAACCAAACCTGTGCAGGACCAAATGGAACACGTTTAGCTTCTAGCGTGAACAACATAAGTTTTGAAAACCCTACCATTGACATACTAGAAGCCTATTACTACCACATCAAAGGGGTGTATCACAAGGGGTTACCAAAATTTCCTCCTTTGAAATTTGACTTTAATGCAGAGTATTTGCCTCTAGAACTTCAGATACCAAAGAAAGGAACCAAGGTGGCTGTTATTAAATTTGGTTCAACAGTTGAACTTGTTTTTCAAGGGACAAATTTGGTTACTGGGATAGACCATCCTATGCATCTGCATGGCACTAGTTTCTTTGCTGTTGGATATGGGTTTGGGAATTTTGATAAACACAAGGACCGCAAGACATACAATCTCATTGATCCTCCCCTTATGAATACAATACTAGTGCCCAAGAATGGTTGGGCCAGCATAAGGTATAGGGCTTCTAACCCAGGAGTGTGGTTTGTGCATTGCCATCTAGACCGCCACCTCTCTTGGGGCATGGAGACTGTGTTTATTGTGACGAATGGGGAAGGAGATGCTGAAATACTACCTCCTCCTCCAGATATGCCCCAGTGTTGA 1701 0.3921 MKMWLGKKIIFLQTLLCFSIVGTNSHGLKEYHFVLKEAHYRRLCSSKPILTVNGQFPGPTVRAYYGETIYVNVHNKGKYNITLHWHGVKQPRNPWSDGPEYITQCPIKPGGKFRQMLIFSIEEGTIWWHAHSDWARATVHGAIYIYPRKGESYPFPTPDEEVPIVLGEWWKSDVSDVYEEFLRNGGSPNESDAITINGQPGDLYPCSKSETFKLNVHYGKTYHLRMVNAAMNLVLFFAVSKHNLTVVGVDSAYSKPLTRDYICIAPGQTADVLLHANQEPNDYYMAARAYSSALGVAFNNGITTARIHYHENHAPNKSPSLPYLPLYNDTKAVFDYYVSIKGLNEADPYQVPTNITTHMLTTLSINTFPCPENQTCAGPNGTRLASSVNNISFENPTIDILEAYYYHIKGVYHKGLPKFPPLKFDFNAEYLPLELQIPKKGTKVAVIKFGSTVELVFQGTNLVTGIDHPMHLHGTSFFAVGYGFGNFDKHKDRKTYNLIDPPLMNTILVPKNGWASIRYRASNPGVWFVHCHLDRHLSWGMETVFIVTNGEGDAEILPPPPDMPQC 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01442 566 Pfam Multicopper oxidase 160 312 IPR001117 -
Gma16g01442 566 Pfam Multicopper oxidase 437 550 IPR011706 GO:0005507|GO:0016491
Gma16g01442 566 CDD CuRO_2_LCC_plant 162 309 IPR034285 -
Gma16g01442 566 Gene3D - 158 345 IPR008972 -
Gma16g01442 566 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Gma16g01442 566 PANTHER LACCASE-15 34 564 - -
Gma16g01442 566 SUPERFAMILY Cupredoxins 28 171 IPR008972 -
Gma16g01442 566 TIGRFAM laccase: laccase 29 566 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gma16g01442 566 ProSitePatterns Multicopper oxidases signature 2. 530 541 IPR002355 GO:0005507
Gma16g01442 566 ProSitePatterns Multicopper oxidases signature 1. 525 545 IPR033138 -
Gma16g01442 566 Gene3D - 17 147 IPR008972 -
Gma16g01442 566 PANTHER MULTI-COPPER OXIDASE 34 564 IPR045087 -
Gma16g01442 566 SUPERFAMILY Cupredoxins 378 566 IPR008972 -
Gma16g01442 566 SUPERFAMILY Cupredoxins 155 333 IPR008972 -
Gma16g01442 566 Gene3D - 370 566 IPR008972 -
Gma16g01442 566 Pfam Multicopper oxidase 37 149 IPR011707 GO:0005507
Gma16g01442 566 CDD CuRO_3_LCC_plant 411 550 IPR034289 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01442 Gma-Chr16 33488331 33491645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01442 K05909 K19791 gmx:100788550 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01442 16 33488331 33491645 Gma16g01442 16 33488331 33491645 ECH
Gma16g01442 16 33488331 33491645 Gma10g02098 10 48511308 48514238 PCT
Gma16g01442 16 33488331 33491645 Gma20g01618 20 43261581 43266007 PCT
Gma10g02098 10 48511308 48514238 Gma16g01442 16 33488331 33491645 PCT
Gma20g01618 20 43261581 43266007 Gma16g01442 16 33488331 33491645 PCT