Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1256 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1258 . . . . . . . Aed9g0216 . . . . . . . . . . Apr9g0643 Apr5g1663 . . . . . . Bva06g01897 Bva10g00933 Car04g03594 . . Cca07g00260 . . . . . . . . Gma04g00223 Gma06g00204 Gma14g02143 Gma17g02471 Gso4g0207 Gso4g0207 Gso4g0207 Gso4g0207 . Lal17g0058 . . . . . . . . . . . . . . . . . . . . . . . Lja5g3330 Mal1g6099 . . . . . . . Mtr1g0726 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0125 . Tpr1g3883 . . . Tsu01g00189 . . . . . . . . . . . . Vra5g1660
Vvi18g1259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1260 . . . . . . . Aed9g0215 Aev08g0192 . Ahy17g2251 . Aip07g02408 . . . . . Apr9g0813 Apr5g1664 . . . . . . Bva06g01895 . . Car05g03276 . Cca07g00259 . . . . . . . . . Gma06g00203 . Gma13g00174 . . . . . . Lal21g0110 . . . . . . . . . . . . . . . . . . . . . Lja1g3494 . . Mal2g0473 . . . . . . . Mtr3g4276 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2896 . Tpr7g0224 . . . Tsu07g00255 . . . . . . . . . . . Vra5g1661
Vvi18g1261 . . . . . . Aed11g0041 . . . . . . . . . . . Apr9g0644 . . . . . . . . . Car04g03595 . Cca05g00380 . . . . . . . . . . . Gma14g02145 Gma17g02472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g6102 . . . . . . . Mtr1g0728 . . . . . . . . Psa5g0056 . . . . . . . . . . . . . . . . Ssu5g0051 . . . . . . . . . . . . . . . . . . . . .
Vvi18g1262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1264 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1265 . . . . . . . . . Aev07g0677 . Ahy16g0050 . Aip06g00043 . . . . . . . . . . . . . Bva10g00935 . Car05g03439 Cca05g00381 . . . . Dod08g2289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g3332 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0122 . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Apr Apr9g0813 Chr9 15614386 15633328 +
Gma Gma13g00174 Chr13 10506729 10537953 -
Sto Sto9g2896 Chr9 30278074 30287299 +
Vvi Vvi18g1256 Chr18 12533689 12534693 +
Car Car04g01678 Chr04 17390151 17392840 +
Vvi Vvi18g1257 Chr18 12545316 12565689 +
Vvi Vvi18g1258 Chr18 12579439 12582501 -
Aed Aed9g0216 Chr9 1531450 1534452 +
Apr Apr9g0643 Chr9 10442150 10448833 -
Apr Apr5g1663 Chr5 20228826 20235282 -
Bva Bva06g01897 Chr06 12939888 12945398 +
Bva Bva10g00933 Chr10 6999072 7004326 -
Car Car04g03594 Chr04 65174496 65177761 -
Cca Cca07g00260 Chr07 3310481 3316250 +
Gma Gma04g00223 Chr04 1898262 1901225 +
Gma Gma06g00204 Chr06 1803353 1806864 +
Gma Gma14g02143 Chr14 52583537 52586719 -
Gma Gma17g02471 Chr17 42746125 42749340 -
Gso Gso4g0207 Chr4 1863454 1870077 +
Gso Gso4g0207 Chr4 1863454 1870077 +
Gso Gso4g0207 Chr4 1863454 1870077 +
Gso Gso4g0207 Chr4 1863454 1870077 +
Lal Lal17g0058 Chr17 338649 341582 +
Lja Lja5g3330 Chr5 64740917 64748764 -
Mal Mal1g6099 Chr1 139886075 139889152 -
Mtr Mtr1g0726 Chr1 8223976 8230097 -
Sto Sto5g0125 Chr5 730925 742652 +
Tpr Tpr1g3883 Chr1 42961469 42967364 -
Tsu Tsu01g00189 Chr01 1458264 1464289 +
Vra Vra5g1660 Chr5 22988904 22994323 -
Vvi Vvi18g1259 Chr18 12608249 12620202 -
Vvi Vvi18g1260 Chr18 12620842 12628019 -
Aed Aed9g0215 Chr9 1518465 1527650 +
Aev Aev08g0192 Chr08 1061603 1068481 +
Ahy Ahy17g2251 Chr17 109065186 109073533 +
Aip Aip07g02408 Chr07 101258884 101266366 +
Apr Apr9g0813 Chr9 15614386 15633328 +
Apr Apr5g1664 Chr5 20239509 20248231 -
Bva Bva06g01895 Chr06 12930126 12938578 +
Car Car05g03276 Chr05 77483168 77496899 -
Cca Cca07g00259 Chr07 3279677 3290326 +
Gma Gma06g00203 Chr06 1785679 1795149 +
Gma Gma13g00174 Chr13 10506729 10537953 -
Lal Lal21g0110 Chr21 746095 755895 +
Lja Lja1g3494 Chr1 43518624 43535642 +
Mal Mal2g0473 Chr2 5416830 5429946 +
Mtr Mtr3g4276 Chr3 56624822 56639042 -
Sto Sto9g2896 Chr9 30278074 30287299 +
Tpr Tpr7g0224 Chr7 1845513 1859014 +
Tsu Tsu07g00255 Chr07 1963508 1976148 +
Vra Vra5g1661 Chr5 23001190 23011070 -
Vvi Vvi18g1261 Chr18 12634521 12635111 -
Aed Aed11g0041 Chr11 281508 286222 +
Apr Apr9g0644 Chr9 10452604 10458304 -
Car Car04g03595 Chr04 65183115 65187623 -
Cca Cca05g00380 Chr05 8302572 8307962 -
Gma Gma14g02145 Chr14 52595635 52602266 -
Gma Gma17g02472 Chr17 42753788 42759643 -
Mal Mal1g6102 Chr1 139901337 139910469 -
Mtr Mtr1g0728 Chr1 8240556 8244860 -
Psa Psa5g0056 Chr5 2720135 2723683 +
Ssu Ssu5g0051 Chr5 958321 963231 +
Vvi Vvi18g1262 Chr18 12645229 12650755 -
Vvi Vvi18g1263 Chr18 12668543 12671756 -
Vvi Vvi18g1264 Chr18 12678960 12679433 +
Vvi Vvi18g1265 Chr18 12683001 12690129 -
Aev Aev07g0677 Chr07 4301440 4306118 +
Ahy Ahy16g0050 Chr16 454797 458546 +
Aip Aip06g00043 Chr06 351768 355512 +
Bva Bva10g00935 Chr10 7012592 7016916 -
Car Car05g03439 Chr05 78863934 78867435 -
Cca Cca05g00381 Chr05 8311448 8312970 -
Dod Dod08g2289 Chr08 50931748 50937142 -
Lja Lja5g3332 Chr5 64759654 64765716 -
Sto Sto5g0122 Chr5 712632 715494 +