Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1265 ATGCTAAGGTCATTCGCTTTCACTTTCTGTCTTGTTGCCAATAACTTTAAGAGCCCCTTTAGTTATTTTCTTTTTCGTTTTCTTTTTCTTGTTATTTTTTTTCAGCATATGAATTGTTTCCGAGTGATACCATATGGAATGGGTTTGCAGTTTACTTCCGGACAGGATCCTATAGTTCGTCCTCTAGTTGAACAAGATTCAAAAACTCTGCAACGTTTGCTTCCAGAGATACCCCAATGGGTGAAAAATCCAGACTATGATCGAGTTGACTGGCTTAACAAATTCATAGAAAATATGTGGCCTTACCTGGACAAGGCAATTTGCAAGACTGCGAAGAACATAGCAAAACCTATCATTGCTGAGCAAATTCCAAAATACAAAATTGATTCAGTTGAATTTGAAGCACTCACCTTGGGCTCCCTACCACCTACATTTCAAGGAATGAAAGTCTATGCTACTGATGAAAAGGAGTTGATCATGGAACTATCCATGAAGTGGGCAGGGAATCCTAACATCACTGTTGCAGTAAAAGCATTTGGGTTGAGAGCCACTGTGCAGGTGGTTGATTTGCAAGTATTTGCTGCTCCTCGCATCACCCTGAAGCCTTTGGTTCCATCATTTCCTTGTTTTGCCAATATATTTGTGTCTCTCATGGAGAAGCCACATGTTGACTTTGGACTAAAGCTGCTAGGAGCAGACGTAATGGCCATTCCTGGCCTGTATCGGTTGGTGCAGGAGCTTATCAAAGATCAGGTTGCAAATATGTACCTATGGCCCAAAACCCTTGAAGTTCCAATAATGGATCCTGCAAAAGCCATGAAAAAGCCTGTTGGCATTCTCAGTGTGAAGGTTGTTAGGGCAATGAAGCTAAAAAAGAAAGATATTATGGGGGCATCAGATCCTTATGTTAAAATGAAGTTGTCTGAGGACAAACTTCCTTCAAAGAAAACTACTGTGAAACATAAAAACTTGAATCCTGAATGGAATGAGGAGTTTAATATGGTTGTTAAAGATCCAGAATCTCAAGCATTAGAGGTCATCGTCTATGATTGGGAACAGGTTGGTAAACATGATAAGATGGGCATGAATGTCATTCCCCTGAAAGAGCTTACACCTGATGAGCCAAAAGTTTTGACACTTGATTTACTTAAAAACATGGACCCGAATGATGTTCAAAATGAGAAGTCACGGGGACAGATTGTTTTAGAAGCTCTGTACAAACCTTTTAAGGACACTGAAATACCAAAGGATCTTGAAGATCCCAATGCGATAGAAAAGGCTCCTGAAGGAACACCTGCTGGTGGTGGTTTGCTTGTAATCATTGTCCATGAAGCTCAGGAGGTTGAGGGAAAGCATCACACAAATCCATATGTTCGATTACTTTTCAGGGGAGAGGAGAGAAAAACCAAGTATGTAAAGAAAAACAGAGACCCCAGATGGGAAGAGGAGTTTCAATTTATGCTGGAGGAACCACCTACCAACGATAGAATACATGTAGAAGTTGTTAGTACCTCATCAAGGATGGGCTTACTACATCCTAAGGAAACTCTGGGTTATGTGGATATAAACCTCTCAGACGTTGTTAGCAACAAACGGATCAACGAGAAATACCATCTAATTGACTCAAAGAACGGAAAGATTCAAATCGAGTTGCAATGGCGAACTTCAACATAA 1674 0.4044 MLRSFAFTFCLVANNFKSPFSYFLFRFLFLVIFFQHMNCFRVIPYGMGLQFTSGQDPIVRPLVEQDSKTLQRLLPEIPQWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLLVIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1265 557 ProSiteProfiles C2 domain profile. 417 537 IPR000008 -
Vvi18g1265 557 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 85 266 IPR039010 -
Vvi18g1265 557 Gene3D C2 domain 266 408 IPR035892 -
Vvi18g1265 557 FunFam Synaptotagmin-2 isoform A 273 428 - -
Vvi18g1265 557 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 85 267 IPR031468 GO:0008289
Vvi18g1265 557 PRINTS C2 domain signature 322 335 IPR000008 -
Vvi18g1265 557 PRINTS C2 domain signature 295 307 IPR000008 -
Vvi18g1265 557 PRINTS C2 domain signature 344 352 IPR000008 -
Vvi18g1265 557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 436 554 IPR035892 -
Vvi18g1265 557 CDD C2 280 382 - -
Vvi18g1265 557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 274 410 IPR035892 -
Vvi18g1265 557 Gene3D C2 domain 437 556 IPR035892 -
Vvi18g1265 557 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 59 553 IPR045050 GO:0008289
Vvi18g1265 557 FunFam Extended synaptotagmin-2 437 555 - -
Vvi18g1265 557 Pfam C2 domain 278 377 IPR000008 -
Vvi18g1265 557 Pfam C2 domain 437 539 IPR000008 -
Vvi18g1265 557 ProSiteProfiles C2 domain profile. 258 380 IPR000008 -
Vvi18g1265 557 CDD SMP_SYT 78 266 - -
Vvi18g1265 557 SMART C2_3c 437 536 IPR000008 -
Vvi18g1265 557 SMART C2_3c 279 379 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1265 Vvi-Chr18 12683001 12690129 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1265 275 535 Lipid Metabolism Gene Families AT3G61300 30.466 3.93e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1265 - - vvi:100260940 1016.14