Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00189 ATGACTCTTGAAGACTTCTTTACCTTGACTGAGATGAAAGATGGGCTCATAGCCCCTTCTCGGGTGCAGGAATTGGTCTCTGTAATGAAGAAGGAGCAAGACAGTGTTGTGAAGAACACTGGTGATACAATGAGACAATGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGACCTTTTTATTCAATTAGATGGACTGTGGTTCATCAATAAATGGTTAACGGATGCTCAAAACGTTGGTGCTGATACAAATGATGGCTTCGTGGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTATATCTAGACAGTGAAAAGCCAATTACATCAGAAATTTGGGCCACCGTAAGTAACCTTCTTGATCATCACAGCTCCAAGGTTCAAGATAGAGCAAGAGGATTATTTGACAAGTGGAAAGAGGTTGGAAACGGAAATGTTGAATCTCATGATATGGATACTGGTCAAAGAAACCATATGAGTGGTAAGAATCTTAAGGAGGAAGGCCAGTTATCTTCAGTGGACAAGGCTAGTAATGACGATGATCATGTGCTGCGACTTGAAGGGGGTGAGAAGTCTATATTGAGAAGCTCAGATACTCAGATATCAGACAAGGTTGCTAATGTAAAGAAAGAGAGTTCTGACAATGCACACCAGTCCTCTGTAAGTTTGGATTGTGAAGATAACAAAGAGAGGTCAAACCATCTTGCTACTGATCTGACTTCTGTTCAAGAAAATGCTCCCGCAAGTGAAGGTGAGTTGACATCGTCTGGGATCTATAACTTACCTGTACCGAAACAAGGCAGTTTTAGAGAACAACCAGATGATTTACAGTTAAATGACCTATCCATGAAGGAGAAGCAAGAACTAAATGATAATGGCCCTGCAGAAAAATTAGGAGCACCAATAACTCCTAAGCCTGAAACTGTTTCTGTTGGTGCTAGTGAAGCAACGGTTAAGCCTGTGCCTGCACCAATAATGCCTGAATCTTCTTTGGAACATAATGTTAAAAGCAATGAAGATGGTGTTAATGATAGAGTAATTGTTTCTTGTAGCATGAAAACACATGCCTCTGACAGAGTGAATGTGGTGGATGGTTCCAGAGCCACAAATTCTAGCAATCCACAACTATCCAAAGCTTCGGTGAAGGAAGACGGCAAGAGCCAAGTTTCTAATCAAGATGATGATACCTCAAATGGCTCTGATTCttttaaacaaagaaaagatTCCCCGAGCCCCAACATTATTGAGAAGAGTTCTGACATGGAACTTGAGTATGGTATTGTTGATGCTTTGGAAGTCGCTCGACAAGTTGCTCAGGAAGTTGATAGAAAATATGCCAGATCTGTAAAGGAAGACAAGGACCAAGTTTCTGATCAAGATGATAATACCTCAAATAGTTCTGATTCCTTCAAACAGAGCAAAGGTTCCAGAACCCCTAACCTTGTTAACAAGAATTCTGACATTGAACTTGAGTATGGTATTGTTGATGCTTTACAAGTCGCTCGACAAGTTGCTCAGGAAGTCGAGAGAGAACTCAATAACTCTTCTTCAGAGAAAATATCAGAAGGTGGAATCAGGCTAGCTGGCAGCCCGGAGTCTGTTGGGAAAAATGATGACGTTGCTTGTGCCCTACCAGAGGAGGTGTCATCCAGGCAAAGCAACTCTGCTGAGGCATGTCCTGAGGAGAAACATATGAGTGTTTCAGATGAGATGGTGGCTGAGCCAGAATGTATCCCTGACTTGGAATCCTCACAGTTGACTGAAGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTTTGCACCTTTGATCTTAATGAAGAATATGGTTCTGATGATGTGAATGTTTCTGCAAATACCATATCTACAACACCAATACCCGTTGTCTCTGCTTCGAAACCTGCACAGACTTCAGGATTGCCAACAGCCCCTCTACAGTTTGAAGGAACGCTTGGATGGAAAGGGTCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCTGATAATCAGAAGATTGTTTCTGCTGGTGGGAACTCTGATATTTCTAAACAGAGGCAGGATTTTCTTGATTTTGATCTGAATGTGGCTGGGGGTGAAGAAGAATTTGTAAAACAAATTGGTGAGTCTTCAGGCCTGCCTTCTGGCCAATCATCAGTGGAACATAGCCCTAAAAGATCAAGGCGGTTTGAATTAGATTTGAACAGTGCTGGTGATGATGGTGATAATACCCAACCTTCTGATCAGAGGATGGATGGGCAGCTCTTCTTTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCATCTTCGTCGTCAATGCAGCCTTCAGTTCGAAACATTGATTTGAATGATAGACCATACTTTCAAACTGATTTGGTGGACCAAGGGCCTATTAAGTCTTCTTCAAGCATTGAAGCATATGGACTTTCCAAGTCAGACGCACCTGCAATATCTATTTTGGGTGCCAAGGTAGAAGTCGGTAGAAGAGAACATGTTCCTCAAATTTGGCCTTTGCCAAATGGCAAGGCTGTTGAACCTGCAATGGATCTTACAATGATGCCAGGATCAGGTGGTATTTCAGGGATGGGCCCTGCGGTATCCTACAGTCATTCAACTTTTTTGGGATATAATGGACTGTCTTCAATGCCCTCTTTGTCTTTTTCGCCAGCGGCGTATGGATCAGGTGGTACGGTTCCATACATGGTGGACTCAAGAGGAGCCCCAGTTGTGCCTCAAGTTGGGGGATCTTCATCAACTGTCCTGTCATCATACGCTCAGCCCTCATATATTATGAGCATGCCCGGTACGCAACTTGGTTTAAATGGTGTTGGACCTTCGCGTCCCAACTTTGATCTTAACTCTGGCTACTTGATTGATGGTGGGAATAGAGATGCATTGGCTACAAGGCCGTTTTTCTTTCCTGGTCAGAGCAGAGCTATGGAGGACAGGACCCTTCAACAATCCTCAAGTTCAGGGGTCGGTgggaaaagaaaagaaccagATGGTAGCTGCTGGGAAACCTATCCATTTGGCTACAAACATCAGCAACCGCCGTGGAAGTAG 3102 0.4313 MTLEDFFTLTEMKDGLIAPSRVQELVSVMKKEQDSVVKNTGDTMRQWAAVASTIAATENKDCLDLFIQLDGLWFINKWLTDAQNVGADTNDGFVEESITAMLRAVEKLYLDSEKPITSEIWATVSNLLDHHSSKVQDRARGLFDKWKEVGNGNVESHDMDTGQRNHMSGKNLKEEGQLSSVDKASNDDDHVLRLEGGEKSILRSSDTQISDKVANVKKESSDNAHQSSVSLDCEDNKERSNHLATDLTSVQENAPASEGELTSSGIYNLPVPKQGSFREQPDDLQLNDLSMKEKQELNDNGPAEKLGAPITPKPETVSVGASEATVKPVPAPIMPESSLEHNVKSNEDGVNDRVIVSCSMKTHASDRVNVVDGSRATNSSNPQLSKASVKEDGKSQVSNQDDDTSNGSDSFKQRKDSPSPNIIEKSSDMELEYGIVDALEVARQVAQEVDRKYARSVKEDKDQVSDQDDNTSNSSDSFKQSKGSRTPNLVNKNSDIELEYGIVDALQVARQVAQEVERELNNSSSEKISEGGIRLAGSPESVGKNDDVACALPEEVSSRQSNSAEACPEEKHMSVSDEMVAEPECIPDLESSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDVNVSANTISTTPIPVVSASKPAQTSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKNSDNQKIVSAGGNSDISKQRQDFLDFDLNVAGGEEEFVKQIGESSGLPSGQSSVEHSPKRSRRFELDLNSAGDDGDNTQPSDQRMDGQLFFGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVDQGPIKSSSSIEAYGLSKSDAPAISILGAKVEVGRREHVPQIWPLPNGKAVEPAMDLTMMPGSGGISGMGPAVSYSHSTFLGYNGLSSMPSLSFSPAAYGSGGTVPYMVDSRGAPVVPQVGGSSSTVLSSYAQPSYIMSMPGTQLGLNGVGPSRPNFDLNSGYLIDGGNRDALATRPFFFPGQSRAMEDRTLQQSSSSGVGGKRKEPDGSCWETYPFGYKHQQPPWK 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 449 494 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 667 693 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 243 270 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 299 336 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 468 493 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 366 427 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 990 1033 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 672 693 - -
Tsu01g00189 1033 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 152 IPR035441 -
Tsu01g00189 1033 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 455 1033 - -
Tsu01g00189 1033 Coils Coil 506 526 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 371 424 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 745 788 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 993 1007 - -
Tsu01g00189 1033 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 397 - -
Tsu01g00189 1033 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 390 451 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 449 467 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 720 739 - -
Tsu01g00189 1033 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 215 281 - -
Tsu01g00189 1033 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 455 1033 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 521 579 - -
Tsu01g00189 1033 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 158 IPR035441 -
Tsu01g00189 1033 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 390 451 - -
Tsu01g00189 1033 MobiDBLite consensus disorder prediction 150 169 - -
Tsu01g00189 1033 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00189 Tsu-Chr1 1458264 1464289 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00189 - - lja:Lj5g3v0238160.2 1370.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00189 01 1458264 1464289 Tsu01g00189 01 1458264 1464289 ECH