Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00935 ATGGGCATTTTCAGTGTCATAACGAGTTTTTTCGGATTTGGAGTGGGCACTTCACTCGGACTGGTGATAGGGTACTATCTATTCATATATTTCCAGCCATCAGATGTCAAGGATCCCACTATCCGTCCTTTGGTTGAGCATGATTCAAAAAGCCTACAACAGTTGCTTCCAGAGATACCCTTGTGGATTAAAAATCCAGATTATGATCGTCTTGACTggcttaataaatttattgagaaTATGTGGCCCTATCTGGACAAGGCAATTTGCACGACTGCGAGGACTATAGCAAAGCCAATAATCGCTGAGCAAataccaaaatataaaattgattcagTTGAATTTGAAGCACTTACCTTGGGTTCTTTACCACCTACTTTTCAGGGAATGAAAGTCTATTCCACTGATGAAAAGGAGTTAATTATGGAACCATCAGTGAAGTGGGCGGGGAATCCTAACATCATAGTTGCAGTTAAAGCATTCGGGTTGCGAGCCACAGTCCAGGTGGTTGATCTGCAAGTATTTGCTGCTCCACGTATCACTCTGAAGCCGCTAGTTCCAAGTTTTCCTTGTTTTGCCAATATATACGTGTCTCTCATGGAGAAGCCACATGTTGATTTTGGACTAAAACTACTTGGGGCAGATGCAATGTCTATTCCTGGCCTTTATAGGTTTGTCCAGGAGCTTATTAAAGAACAGGTTGCAAAAATGTATCTATGGCCCAAGGCCTTGGAGGTGCAGATAATGGATCCAACAAAGGCCATGAAATTGCCTGTTGGAATTCTCCAAGTGAAGGTTCTGAAGGCAGTGAAgcttaaaaagaaagatctCATAGGGGGATCTGATCCTTATGTGAAACTCAAACTCACAGAGGATAAACTCCCTTCAAAGAAGACAACTGTTAAGTACGGCAATTTGAATCCAGAATGGAATGAGGAATTTCATCTGGTCGTCAAAGACCCAGAATCTCAAGTCTTAGAGCTTAATGTTTATGATTGGGAGAAGGTTGGCAAGCATGACAAGATGGGTATGAATGTCATTCCGTTGAAAGAGCTTACTCCAGATGAACCTAAAGTAATGACTCTTGATTTACTCAAGACTTTGAACCCAAATGATGTTGAAAATGAGAAGTCGCGTGGGCAGCTCGAAGTGGAAGTGTTGTATAAACCTTTTAAGGAGGATGAACTACCTGGGAACGAAGAAGATTCCAATACAATAGAAAAGGCTCCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAATTATCATCCATGAAGCCGAAGATGTAGAAGGGAAACACCACACGAATCCATATGCACGATTACTTTTCAAaggagaggagaggaagaCCAAGCATATTAAGAAAAACAGAGATCCAAGATGGGAAGAAGAGTTTCAGTTCATGCTGGAGGAAGCCCCAACGAGTGCCAGGCTTTATGTGGAAGTGCTTAGTTCCTCGTCAAAATTGGGCATCCTGCATCCTAGGGAAACTCTGGGTTACGTGGATATAAGTCTAGCTGATGTCGTCACCAACAAAAGAATCAACGAGAAATATCATCTCATTGACTCAAGAAATGGCCGCATTCAGATTGAGCTGCAGTGGAGAACTCCATG 1616 0.4066 MGIFSVITSFFGFGVGTSLGLVIGYYLFIYFQPSDVKDPTIRPLVEHDSKSLQQLLPEIPLWIKNPDYDRLDWLNKFIENMWPYLDKAICTTARTIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYSTDEKELIMEPSVKWAGNPNIIVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKEQVAKMYLWPKALEVQIMDPTKAMKLPVGILQVKVLKAVKLKKKDLIGGSDPYVKLKLTEDKLPSKKTTVKYGNLNPEWNEEFHLVVKDPESQVLELNVYDWEKVGKHDKMGMNVIPLKELTPDEPKVMTLDLLKTLNPNDVENEKSRGQLEVEVLYKPFKEDELPGNEEDSNTIEKAPEGTPASGGLLVIIIHEAEDVEGKHHTNPYARLLFKGEERKTKHIKKNRDPRWEEEFQFMLEEAPTSARLYVEVLSSSSKLGILHPRETLGYVDISLADVVTNKRINEKYHLIDSRNGRIQIELQWRTP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00935 538 CDD C2 279 364 - -
Bva10g00935 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Bva10g00935 538 PRINTS C2 domain signature 277 289 IPR000008 -
Bva10g00935 538 PRINTS C2 domain signature 304 317 IPR000008 -
Bva10g00935 538 PRINTS C2 domain signature 326 334 IPR000008 -
Bva10g00935 538 Gene3D C2 domain 258 413 IPR035892 -
Bva10g00935 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 392 IPR035892 -
Bva10g00935 538 Gene3D C2 domain 419 537 IPR035892 -
Bva10g00935 538 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Bva10g00935 538 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Bva10g00935 538 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Bva10g00935 538 Pfam C2 domain 419 521 IPR000008 -
Bva10g00935 538 Pfam C2 domain 260 359 IPR000008 -
Bva10g00935 538 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Bva10g00935 538 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Bva10g00935 538 SMART C2_3c 419 518 IPR000008 -
Bva10g00935 538 SMART C2_3c 261 361 IPR000008 -
Bva10g00935 538 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00935 Bva-Chr10 7012592 7016916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00935 258 517 Lipid Metabolism Gene Families AT3G61300 27.698 1.07e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00935 - - gmx:100820475 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00935 10 7012592 7016916 Bva10g00935 10 7012592 7016916 ECH