Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03594 ATGACTCTTGAAGACTTCTTTACGTTGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTAATGAAGAAGGAGCAAGACAGTGTTGTGAAGAACACTGGTGATGCAATGAGACAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGACTGCCTCGACCTTTTTATTCAATTAGATGGACTTTGGTTCATCAATAGATGGCTAAATGATGCTCAAAAATTTGGTACTGATTCAAATGATGGCTTCATGGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTATATCTAGACAATGAGAAGTCAATTTCATCCGGAGTTTGGGCAACTATAAGTAACCTTCTTGGTCATCACAGCTCTAAGGTTCAAGATAGTGCAAGAGTACTATTTGACAAGTGGAAAGGTGTTGGAAATGGAGATACTGAATCTCACGATATGGATACTGGTCAAACAAACAATATGAGTGAGAATCTCAGGGAGGAAGGCCAGTTATCTTCAGTGAATGAGGCTAGTAATGACAATGATCGTGTCTTGCGACTTGTAGGAGGGGAGAAGTCTATATTGAGAAGCTTAGAAACTCAAGTACCAGATAAGGTTGCTGATGTACAGATAGAGAGTTCTGGCATTGTGCACCAATCCTCTGTAAGTTTGGATTCTGAAGATATCAAAGAAAAATCAAACAATGTTGCTACTGTTTTGACTTCTGTTCAAGAAAATGCTCCCATAAGTGAAGGTGAGATGAAATTGTCTGGGATCTGTAACTCACCTGTACCAAAACAAGGCAGTTTCAGAGAACAACAAGATGATATGCAGTTAAATGACTTATCTATAAAGGAGAAGCAAGAGCTAAATGATAATGGCCCTCCAGAAAAATCAGGAGTACCAATAAATCCTGAGCCTCAGCCTGAACCTGTTTCTGTTGGTGTTAGTGAATCACCAGTTAAGCCTGTGCCTGCACCAATAATGCCTGTATCTTCTTTAGAACATAATGTTGAAAGCAATGAAGATGGTATTTGTAATAAAATAATTGCTTCTGGTAGTATGAGAGCACCTGCCTCTGATAGAATGAGTGTGGTGGATGATGCCAGAGCCATAAGCACTCCACAACTATCCAAAGATTCAGAGAAGGAAGAAGTCAAGGGCCATGTTTCTGATCAAGGCAACGATTCCTCAAATGGCTCTGATTCTTTTAAACAAAGAAAAGTTCCCAGAAGCCCCAACATTATTGACAAGAATTCTGACATCGAACTTAAGTATGGTATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAAGAAGTTGATAGAAAATATGCCAGATCTGTAAAGGAAGACGAGGACCAAGTTTCTGATCAAGATGATGATACCTCAAATAGTTCTGACTCATTCAAACAGGGCAAACGTTCCAGAAGCCCCAACATTGTTGACAAGAATTCTGACGTTGAACTTGAGTATGGTATTGTTGATGCTTTACAAGTCGCTCGACAAGTTGCTCAGGAAGTTGAAAGAGAAATCAAGAACTCTTCTTCAGAGAAAATCTCAGAAGATGGAAATAGGCAAGCTGGCAGTCCGGATTCTGAGGTGTCATCCAGGCAAAGCAACTCTGCTGAGGCATGTCCTGAGGAGAGGCATATGAGTGTTTCGGATGGTATTGTGGCTGAGCCAGAATGCATCCCTGATTTGGAGTCCTCACAGTTGACTGAAGCAGCTCAAGACCCAGGAGGTAATTCTGAGAAAAGCCTCTGTACCTTTGATCTTAATGAAGAATATGGTTCTGATGATATGAATGTTTCTGCAAATACCATATCTACCACACCAATACCTGTTGTCTCTGCTTCAAAACCTGCACAAACTTCAGGATTGCCAACAGCCCCTTTACAGTTTGAAGGAACACTTGGATGGAAAGGGTCAGCTGCTACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCTGATAGTCAGAAGAATGTTTCTGCTGTTGTAAACTCTGATATTTCCAAACAGAGGCAGGATTTTCTTGATTTTGATCTGAATGTGGCTGGGGGTGAAGAAGAATTGGTAAAACAAATTGGTGAGTCTTCGGGCCTGCCTTCTGGGCAATCATCAGTGGAACATAGTCCTAAAAGATCAAGGAGGTTTGAATTAGATTTGAACAGTGCTGGTGATGATGGTGATACCCAGCCTTCAGATCAGAGGATGGAGGGGCAGCTCTTTTCTGGAAGAAATGGCTATTGGAGTCCATCACCTGCATCGTCGTCATCATCAATGCAGCCTTCAGTTCGAAACATTGATTTGAATGACAGACCATACTTTCAAACTGATTTAGTGGACCAAGGGCCTACTAAATCTTCTACAAGTATTGAAGCATATGGACTTTCCAAACCAGATGCTCCTGCTATATCTATTTTAGGTGCCAAGGTTGAAGTTGGTAGAAGAGAACATTTTCCTCAAATGTGGTCTTTGCCAAATGGCAAGGCTATTGAGCCTGCAATAGATCTTACAATGATGCCAGGAGCAGGTGGTGTTTCAGGGATGGGACCTGCAGTATCCTTCAATCATTCAACTTTTATGGGATATAATGGACTGACATCAGTTCCCCCTTTGTCTTTTTCGTCACCCATGTATGGATCAGGCGGTACAATTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTGCCTCAAGTTGGTGGATCTTCCTCAACCGTCCTGTCATCTTACGCGCAGCCTCCATATATTATGAGTATGACTGGTACACAACTTGCTTTAAATGGTGTCCGACCTTCCCGTCCCAACTTTGATCTTAACTCTGGCTTGTCGATTGATGGTGGGAATAGAGATGTGTTGACTGCAAGGCCATTTTTCTCTCCTAGTCAGAGCAGAGCTATGGAGGAACATTTAAGGACCCTTCCACAATCCTCAAGTTCAGGGGTTGGGTCGAAACGAAAAGAACCAGATGGTAGCTGCTGGGAAACCTATCCATTTGGCTACAAACATCAGCAACCTCCGTGGAAGTAG 3063 0.4247 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDSVVKNTGDAMRQWAAVASTIAATENKDCLDLFIQLDGLWFINRWLNDAQKFGTDSNDGFMEESITAMLRAVEKLYLDNEKSISSGVWATISNLLGHHSSKVQDSARVLFDKWKGVGNGDTESHDMDTGQTNNMSENLREEGQLSSVNEASNDNDRVLRLVGGEKSILRSLETQVPDKVADVQIESSGIVHQSSVSLDSEDIKEKSNNVATVLTSVQENAPISEGEMKLSGICNSPVPKQGSFREQQDDMQLNDLSIKEKQELNDNGPPEKSGVPINPEPQPEPVSVGVSESPVKPVPAPIMPVSSLEHNVESNEDGICNKIIASGSMRAPASDRMSVVDDARAISTPQLSKDSEKEEVKGHVSDQGNDSSNGSDSFKQRKVPRSPNIIDKNSDIELKYGIVDALEVARQVAQEVDRKYARSVKEDEDQVSDQDDDTSNSSDSFKQGKRSRSPNIVDKNSDVELEYGIVDALQVARQVAQEVEREIKNSSSEKISEDGNRQAGSPDSEVSSRQSNSAEACPEERHMSVSDGIVAEPECIPDLESSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDMNVSANTISTTPIPVVSASKPAQTSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKNSDSQKNVSAVVNSDISKQRQDFLDFDLNVAGGEEELVKQIGESSGLPSGQSSVEHSPKRSRRFELDLNSAGDDGDTQPSDQRMEGQLFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVDQGPTKSSTSIEAYGLSKPDAPAISILGAKVEVGRREHFPQMWSLPNGKAIEPAIDLTMMPGAGGVSGMGPAVSFNHSTFMGYNGLTSVPPLSFSSPMYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYAQPPYIMSMTGTQLALNGVRPSRPNFDLNSGLSIDGGNRDVLTARPFFSPSQSRAMEEHLRTLPQSSSSGVGSKRKEPDGSCWETYPFGYKHQQPPWK 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03594 1020 MobiDBLite consensus disorder prediction 398 414 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 528 550 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 383 397 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 976 996 - -
Car04g03594 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 382 - -
Car04g03594 1020 Coils Coil 505 525 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 512 614 - -
Car04g03594 1020 ProSiteProfiles TFIIS N-terminal domain profile. 80 153 IPR017923 -
Car04g03594 1020 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 158 IPR035441 -
Car04g03594 1020 MobiDBLite consensus disorder prediction 976 1007 - -
Car04g03594 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 454 1020 - -
Car04g03594 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 454 1020 - -
Car04g03594 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 382 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 619 638 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 446 494 - -
Car04g03594 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 386 450 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 362 423 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 653 672 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 737 774 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 294 327 - -
Car04g03594 1020 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 151 IPR035441 -
Car04g03594 1020 MobiDBLite consensus disorder prediction 731 774 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 658 672 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 706 725 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 446 461 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 513 527 - -
Car04g03594 1020 MobiDBLite consensus disorder prediction 578 597 - -
Car04g03594 1020 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 386 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03594 Car-Chr4 65174496 65177761 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03594 - - lja:Lj5g3v0238160.2 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03594 04 65174496 65177761 Car04g03594 04 65174496 65177761 ECH