Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03439 ATGTGGCCGTACCTTGACAAGGCAATATGCAACACTGCAAAAAATATTGCAAAACCCATAATTGCAGAGCAGATCCCAAAATATAAAATTGATTCGGTTGAGTTTGAAGTGCTCACACTAGGGTCCCTTCCACCAACTTTTCAAGGAATTAAAGTTTACACGACAGACGAAAAAGAGCTAATTATGGAGCCCTTCTTAAAATGGGCTGGAAATCCTAATGTCACCATTGCAGTTAAGGCATTTGGGTTGAAAGCAACTGTTCAGGTGGTAGATTTGCAAGTTTTTGTTGCACCTCGTATTACTTTGAAGCCTTTGGTTCCATGTTTTCCTTGCTTTGCCAACATCTATGTGTCTCTCATGGAAAAGGTTTGTGGTAGTTATAATGTCTATCAATTTTTCTTTTTCATTTTTACCTTTGTTATTGTGCAGCCTCATGTGGACTTCGGGCTAAAGCTTATAGGAGCTGATCTAATGTCTATTCCTGGACTCTACAGGTTTGTTCAGGAATTTATCAAAGATCAAGTTGCAAATATGTATCTATGGCCCAAAACCTTGGAAGTTCAAATTATAGACCCAGCAAAAGCTTTCAAAAGGCCTGTTGGGATTTTAAATGTAAAAGTTATTAAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAACTTACTGGGGACAATTTGCCATCAAAAAAGACCACTGTAAAACACAAAAACTTGAACCCGGAATGGAATGAGGAATTTAGTTTGGTTGTTAAAGATCCTGAGTCTCAAGCTTTGGACATTCATGTTTATGATTGGGAACAGGTTGGGAAGCATGACAAGATGGGTATGAATGTAATCCAATTGAAAGAACTCACCCCTGAAGAGCCTAAAGTTTTGACTCTTGAGCTTCTAAAAAATATGGATCCTAATGATACACAAAATGACAAGTCTCGTGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAAGACATGGACAAAGGTTATGATGAGACACAATCACTTCAAAAACCTCCTGAGGGCACTCCTCCAGGTGGAGGTCTGCTCGTAATAATAGTCCATGAAGCTCAAGATATTGAAGGAAAATATCACACCAATCCACATGTACGTATTATTTTTAGAGGAGAAGAAAAAAAGACTAAGAGCATCAAAAAGAATAGAGATCCAAGATGGGAAGAGGAATTTCAATTTATGGTGGAGGAACCTCCCACTAATGACAAATTACATGTCGAAGTTTTCAGTACTTCATCACGAAATTTATTACGTCAGAAGGAATCATTGGGTTATGCTGACATCTCTCTTACGGACGTGGTTAGTAACAAGAGAATCAATGAGAAATATCATCTTATAGACTCTAAAAATGGTCGCATTCAAATAGAGATGCAATGGAGAGCCTCACAAGCTAGTTGA 1446 0.3804 MWPYLDKAICNTAKNIAKPIIAEQIPKYKIDSVEFEVLTLGSLPPTFQGIKVYTTDEKELIMEPFLKWAGNPNVTIAVKAFGLKATVQVVDLQVFVAPRITLKPLVPCFPCFANIYVSLMEKVCGSYNVYQFFFFIFTFVIVQPHVDFGLKLIGADLMSIPGLYRFVQEFIKDQVANMYLWPKTLEVQIIDPAKAFKRPVGILNVKVIKAMKLKKKDLLGASDPYVKLKLTGDNLPSKKTTVKHKNLNPEWNEEFSLVVKDPESQALDIHVYDWEQVGKHDKMGMNVIQLKELTPEEPKVLTLELLKNMDPNDTQNDKSRGQIVVELTYKPFKEEDMDKGYDETQSLQKPPEGTPPGGGLLVIIVHEAQDIEGKYHTNPHVRIIFRGEEKKTKSIKKNRDPRWEEEFQFMVEEPPTNDKLHVEVFSTSSRNLLRQKESLGYADISLTDVVSNKRINEKYHLIDSKNGRIQIEMQWRASQAS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03439 481 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 359 476 IPR035892 -
Car05g03439 481 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 1 122 IPR039010 -
Car05g03439 481 ProSiteProfiles C2 domain profile. 181 303 IPR000008 -
Car05g03439 481 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 197 334 IPR035892 -
Car05g03439 481 SMART C2_3c 202 302 IPR000008 -
Car05g03439 481 SMART C2_3c 360 458 IPR000008 -
Car05g03439 481 ProSiteProfiles C2 domain profile. 339 459 IPR000008 -
Car05g03439 481 Gene3D C2 domain 360 478 IPR035892 -
Car05g03439 481 MobiDBLite consensus disorder prediction 336 355 - -
Car05g03439 481 Gene3D C2 domain 196 351 IPR035892 -
Car05g03439 481 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 123 - -
Car05g03439 481 PRINTS C2 domain signature 245 258 IPR000008 -
Car05g03439 481 PRINTS C2 domain signature 218 230 IPR000008 -
Car05g03439 481 PRINTS C2 domain signature 267 275 IPR000008 -
Car05g03439 481 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 132 477 - -
Car05g03439 481 CDD C2 203 305 - -
Car05g03439 481 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 190 IPR031468 GO:0008289
Car05g03439 481 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 132 477 IPR045050 GO:0008289
Car05g03439 481 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 123 IPR045050 GO:0008289
Car05g03439 481 Pfam C2 domain 360 461 IPR000008 -
Car05g03439 481 Pfam C2 domain 201 300 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03439 Car-Chr5 78863934 78867435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03439 199 457 Lipid Metabolism Gene Families AT3G61300 27.372 8.24e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03439 - - cam:101497090 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03439 05 78863934 78867435 Car05g03439 05 78863934 78867435 ECH