Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1661 ATGGATTCGAACACTTCGCCACCGTGCCCCGACATCATCACGGTTCGTCGGAATCCTCCCCGAAAAGCTCGCGCCACTCCCCAAATGACGCCGAAAAGCTTCGTCTTACCCGAAATATCGGTATTTCCAAACGACGACGTGTTGCCGCCACAAACGCCACAAAAGCCCTTAACGTCACCGGAGAACGAAAATCTAAAGATTTTCCTCCGAATTCGACCCCTTTCCTCTTCGCCCATTCAGGCACCCCGCATGAGAGGTAAGAGTGCGTGGCCTCAGAATCCCGTGAAAAAGAACGTGCCCGCGGCGGGGGCTAAAATTTCGAAGAGCAAGAACTCTGGCACGTGTGTAACGGTCAACGACTCGCAGTCAGTGACGTTATCAACTCCCGTTAGCTGGCATGAATCGAAGCGAATCAAATCGGAGACTTACGGAGGCTTCTCGCACGTTTTCTCTTCGGATTCATCTCAGTTTCAAGTGTATGAGAGAATGATGAAACCTTTGGTGGAGGAGTTTCTTGGGGGTAAAAGTGGAATGCTTGCTGCATTGGGACCTAGTGGGTCTGGGAAGACTCACACCGTGTTTGGAACCCCTAGAGATCCTGGAATGGTACCTCTTGCCCTACGCCATATCTTTGAGGACGCTGAGCCACATTTCAAACAACCATCTAGAACCTTTTACATGTCAATATTTGAGATATGTTCTGAACGGGGTAAAGCAGAGAAACTGTTCGATTTGTTATCAGATGGAGGTGAAATAAGCATGCAGCAATCTTCTGTGAAGGGATTGAAAGAGGTTCCCATCTCTAATAAGGAACAGGCAGAGTCCTTGATTGCACAAGCAACGCTTAAACGTGCTACTTCAATGACAAACACTAACAGTCAGTCGAGCCGGTCACAATGCATTATTAACATTTGTGATGCTCCCCCAAAATATAAAGGGGTTGTCAATCCTAAGTCAAACGGTGCTGTTTTGACTATCATTGACCTTGCTGGGGCTGAAAGAGAAAAAAGAACAGGGAATCAGGGGGCAAGATTGCATGAAAGCAATTTTATCAACAACACATTAATGGTGTTTGGGTTATGCTTAAGATCATTATTGGAGCACCAAAAAAATCGCAAGAAACCATTGCAGAAGCACTTCCAGAGCTCCATGTTAACCAGGTACCTGCGAGATTATTTGGAGGGCAAGAAGCGCATGTCCTTGATTTTAACTGCAAAACCTGGAGAAGAAGATTATCTTGATACTTCTTATCTACTGCGACAAGCTTCTCCTTACATGCAGATCAAGTACAATGAAGTTGAACCATCAAATATAGTTCCAAAAAAAAGGCATTACCAAGGTTCGTCAATAATGGATGATTCAAAACTGTCACCTTTATCAGAAAATTTGAAGAGAATGAGACTTGTTAGTGAACATACCAAGCAGAATGATAAAAACAGTGCCGAAGAAAGGGAGAACATTGCAGAAGCCTCTTCAGCACTCGGCAAATTAGATGCTAATAGTTCTGTCTCTTTAAAGTCGGAGTTTGATAGCCAAGTCCCGAGTGAGAGGAGCCACATTATAATGCAGAATTTTGCAAAAGTTATTTGGAATGTTTTGAAGCAATATAATTCGAAGCTAAAGGTTGCAGAAATGGAAATAGAAAGTCTCAAAGAAAGCATTGTGAATGAAAAGACAAAATACTGGGAGATAGAAACACAGTTGAACGATTTTAAGGCAAATTGTACTTGCTGCAAAGTAGGAAATATAAAAAATGATGCTGAATATTGTTCGTCAGTCAGTCTGGTTCAACCACATATTTCAGAGCAACAGGAAACATTTCATTCAGAGTCCTCATTTTTGGCTAGAGTTGACCAGTCTGATGAAGATGAGCTCGTGCTCAGTACTTCCTGTACGCAGTTATGTTCTGAAAACTCAGATAGGGAGGCTTTTTCCTTGACAAAGCCTGAGAATCATAGTGCTTCGGAGGTTGATGATGGGAGCAAGATACTTAGTGAATCATCTGATGCACAGTCATCTTCTGATGGTAGACTTGACCACTCCGATGAACGGCCTACCCTTGGCACTTCCTGTACACAGCCAGATGCCAACATGAAACTTTCAACCTCCTTGTTAAAAGCTGAGGACCATAATACTTTGGAGGTTGAGGCTGTGCGCAAGAGATCAAGTGAGTCATTTGATGCGCGGTCATTGTCTGAGGTTTCACTTGACCTGTCAGATGAAGAGCTTACACTTGGTGCTTCCTGTAGACAGTTAGATTGTGAAAAGTCGGATAGGGAAGTTTCAATCTCCTTGTCAAAAGCAGAGGACCATAATGCTTCGGAGATTGAGGCTGTGCGCAAGATACCAAGTGAATTGTTCGTTTCGTCATCATCGACAGAAGATGACAAGTTGGATCCTTTGCCATCACCCAAAGATGTTTCATCTACTAAAACAGACAACCTTGTGGATCCACGTGATAAGATTGGTGTCGATATCTCTCGCAAACCTCCTAAGCCAAAAAGGACACTTATGCCTTCCTCTTCCATGCTATCAAGGGACTTGAGTACCTTTGATCTCTATGACGAATCTGAGAAATTAAAGGGGAATCGGGGCACAAGGAAGTTATCTGCACATGAACCTCAAAGATCAAATGGAAGCCTCTCTCTGCTACACTTGCTGCAATGTGCCGACTTGCCTCTCTGGAATGTATCTTCTGCCTTGCAGTTGCAGTTAGCCAATTACCGCTACAAAGTTAGTTTTTTGCTAGTAAATCATGTTTTTCTTTGA 2769 0.4352 MDSNTSPPCPDIITVRRNPPRKARATPQMTPKSFVLPEISVFPNDDVLPPQTPQKPLTSPENENLKIFLRIRPLSSSPIQAPRMRGKSAWPQNPVKKNVPAAGAKISKSKNSGTCVTVNDSQSVTLSTPVSWHESKRIKSETYGGFSHVFSSDSSQFQVYERMMKPLVEEFLGGKSGMLAALGPSGSGKTHTVFGTPRDPGMVPLALRHIFEDAEPHFKQPSRTFYMSIFEICSERGKAEKLFDLLSDGGEISMQQSSVKGLKEVPISNKEQAESLIAQATLKRATSMTNTNSQSSRSQCIINICDAPPKYKGVVNPKSNGAVLTIIDLAGAEREKRTGNQGARLHESNFINNTLMVFGLCLRSLLEHQKNRKKPLQKHFQSSMLTRYLRDYLEGKKRMSLILTAKPGEEDYLDTSYLLRQASPYMQIKYNEVEPSNIVPKKRHYQGSSIMDDSKLSPLSENLKRMRLVSEHTKQNDKNSAEERENIAEASSALGKLDANSSVSLKSEFDSQVPSERSHIIMQNFAKVIWNVLKQYNSKLKVAEMEIESLKESIVNEKTKYWEIETQLNDFKANCTCCKVGNIKNDAEYCSSVSLVQPHISEQQETFHSESSFLARVDQSDEDELVLSTSCTQLCSENSDREAFSLTKPENHSASEVDDGSKILSESSDAQSSSDGRLDHSDERPTLGTSCTQPDANMKLSTSLLKAEDHNTLEVEAVRKRSSESFDARSLSEVSLDLSDEELTLGASCRQLDCEKSDREVSISLSKAEDHNASEIEAVRKIPSELFVSSSSTEDDKLDPLPSPKDVSSTKTDNLVDPRDKIGVDISRKPPKPKRTLMPSSSMLSRDLSTFDLYDESEKLKGNRGTRKLSAHEPQRSNGSLSLLHLLQCADLPLWNVSSALQLQLANYRYKVSFLLVNHVFL* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1661 922 SMART kinesin_4 62 436 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 MobiDBLite consensus disorder prediction 642 696 - -
Vra5g1661 922 ProSiteProfiles Kinesin motor domain profile. 64 428 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 MobiDBLite consensus disorder prediction 643 663 - -
Vra5g1661 922 Gene3D Kinesin motor domain 56 436 IPR036961 -
Vra5g1661 922 Coils Coil 533 560 - -
Vra5g1661 922 PRINTS Kinesin heavy chain signature 174 195 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 PRINTS Kinesin heavy chain signature 289 306 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 PRINTS Kinesin heavy chain signature 323 341 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 PRINTS Kinesin heavy chain signature 378 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 MobiDBLite consensus disorder prediction 1 31 - -
Vra5g1661 922 PANTHER KINESIN-LIKE PROTEIN KIF23 62 764 - -
Vra5g1661 922 Pfam Kinesin motor domain 110 424 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1661 922 MobiDBLite consensus disorder prediction 812 832 - -
Vra5g1661 922 PANTHER KINESIN-RELATED 62 764 IPR027640 GO:0003777|GO:0007018
Vra5g1661 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 429 IPR027417 -
Vra5g1661 922 MobiDBLite consensus disorder prediction 787 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1661 Vra-Chr5 23001190 23011070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1661 50 446 Miscellaneous Gene Families AT5G06670 27.603 4.47e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1661 K10401 - gmx:100794655 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1661 5 23001190 23011070 Vra5g1661 5 23001190 23011070 ECH