Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0041 ATGGGAATTTTGAGCACCATAGCAAGCTTTTTTGGATTTGGAGTGGGAACTTCAATTGGGCTAGTCATTGGCTACTGTTTCTTCATATACTTCCAGCCAACAGATGTCAAGGACCCAGTAATTCAACCTTTGGTTGACCAAGATGCTAAAACTCTACAACTGTTGCTTCCAGAGATACCCACTTGGATTAAAAACCCAGACTATGACCGTCTTGACTGGCTTAATAAATTTATTGAGTATATGTGGCCTTATCTGGACAAGCAAAGCCCATTATCGCTGAGCAAATTCCGAATCTATATGACTGACGAAAAGGAGTTGATTATGGAACAATCAGTGAAGTGGGCTGGGAATCCTAACATTATAGTTGCAGTTAAAGCATTTGGGCTTCGAGCCACAGTTCAGGTTGTTGATTTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTGGTTCCAAGTTTTCCATGTTTTGCAAATATTTACGTGTCTCTCATGGAGAAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGGGCTGATGCAATGTCTATTCCTGGTCTTTATAGGATTGTCCAGGAAATCATTAAAGAACAAGTTGCAAAAATGTATCTGTGGCCCAAGGCCTTAGAGGTGCAAATAATGGATCCAACAAAGGCTATGAAAGTGCCAGTTGGAATCCTTCATGTGAAAGTTGTGAGGGCAGAGAAGCTTAAAAAGAAAGATCTACTGGGAGCATCAGACCCTTATGTGAAGTTCAAACTCACAGAAGAGAAACTTCCTTCAAAGAAAACAACCGTGAAATACAAGAATTTGAATCCGGAATGGAATGAGGAATTTAATATAGTTGTCAAAGATCCAGAATCTCAAGTCTTGGAGCTTACTGTTTATGACTGGGAGCAAATTGGCAAGCATGACAAGATGGGTATGAATGCCATTCCATTGAAAGAGATTACACCTGATGAACACAAAGTGGTGACTCTTAATTTACTGAAGACCATGGACCCTAATGACCCTGAAAATGAGAAGCCACGGGGGAAGCTAACTGTTGAAGTTCGGTACAAACCTTTTAAGGAGGATGAGTTACCTCAGAGTGCAGAAGATCCCAATGCAATAGAAAAAGCTCCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAATTATCGTCCATGAAGCTGAAGATGTGGAAGGAAAACACCACACAAATCCATATGTGCGACTTCTGTTTAAGGGAGAAGAAAGAAAAACCAAGCATGTAAAGAAAAATAGAGATCCAAGATGGGGTGAGTCATTTCAATTTATGCTGGAGGAACCTCCCACCAATGAGAGACTATATGTTGAAGTACAAAGTGCATCTTCAAAGCTTGGCCTGCTGCATCCTAAGGAAAATCTGGGTTATGTGGATATAAAATTGTCTGACGTTGTTACCAACAAAAGAATCAACGAGAAGTATCACCTCATTGACTCAAGAAATGGACGGATTCAAATTGAGCTTCAGTGGAGAACTCCTTGA 1515 0.4079 MGILSTIASFFGFGVGTSIGLVIGYCFFIYFQPTDVKDPVIQPLVDQDAKTLQLLLPEIPTWIKNPDYDRLDWLNKFIEYMWPYLDKQSPLSLSKFRIYMTDEKELIMEQSVKWAGNPNIIVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKEQVAKMYLWPKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKFKLTEEKLPSKKTTVKYKNLNPEWNEEFNIVVKDPESQVLELTVYDWEQIGKHDKMGMNAIPLKEITPDEHKVVTLNLLKTMDPNDPENEKPRGKLTVEVRYKPFKEDELPQSAEDPNAIEKAPEGTPASGGLLVIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLYVEVQSASSKLGLLHPKENLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRTP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0041 504 PRINTS C2 domain signature 270 283 IPR000008 -
Aed11g0041 504 PRINTS C2 domain signature 292 300 IPR000008 -
Aed11g0041 504 PRINTS C2 domain signature 243 255 IPR000008 -
Aed11g0041 504 SMART C2_3c 227 327 IPR000008 -
Aed11g0041 504 SMART C2_3c 385 484 IPR000008 -
Aed11g0041 504 CDD C2 228 324 - -
Aed11g0041 504 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 215 IPR031468 GO:0008289
Aed11g0041 504 Gene3D C2 domain 223 378 IPR035892 -
Aed11g0041 504 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 88 212 IPR039010 -
Aed11g0041 504 Gene3D C2 domain 385 503 IPR035892 -
Aed11g0041 504 ProSiteProfiles C2 domain profile. 206 328 IPR000008 -
Aed11g0041 504 ProSiteProfiles C2 domain profile. 365 485 IPR000008 -
Aed11g0041 504 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 222 358 IPR035892 -
Aed11g0041 504 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 93 503 IPR045050 GO:0008289
Aed11g0041 504 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 93 503 - -
Aed11g0041 504 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 88 - -
Aed11g0041 504 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 384 502 IPR035892 -
Aed11g0041 504 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 88 IPR045050 GO:0008289
Aed11g0041 504 Pfam C2 domain 385 487 IPR000008 -
Aed11g0041 504 Pfam C2 domain 226 325 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0041 Aed-Chr11 281508 286222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0041 224 494 Lipid Metabolism Gene Families AT3G61300 25.939 1.03e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0041 - - gmx:100778906 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0041 11 281508 286222 Aed11g0041 11 281508 286222 ECH