LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g01897	ATGACgcttgaagatttttttactttgactGAGATGAAAGATGGGCTCACATCCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTAATGCAGAAGGAGAAAGATTGTGTTGTCAAGAATGCTGGTGACACCACAAGGCAGTGGGCTGCCGTTGCAAGCACCATTGCTGCTACAGAGAATAAAGACTGTCTTGatctttttattcaattggaTGGACTTTGGTTCATCAATAGGTGGTTGACTGATGCTCAAAATTTTGTGGACACAAAAGATGGCTTCATTGAAGAATCAATTACTGCACTTTTACGAGCAGTTGAAAAGCTGCATCTAGACGGTGAAAGGTCAATCTCATCAGGGATTTGGGTAACTGTAAGAAATCTTCTCAGCCACCAGAACTCTAGGGTTCAGGATAGAGCAAGAGTACTATTTGACAGCTGGAGGGTGGGTGGAAATGTTGATGTAGATCCTCCTGATAAAGATCTTGTTAGAGACAATGATAGAAGTGAAAAGGTTGTGAGGGAGGAAGGTGGGTCGTCTGCTCTGAATGAATCTAGCAGTGATACCGGTCATGCATCAGGACTGGTTGGAGGTGAGAAAACAACAAGCATGGATAGTCCACTACCAGAAAGGGTTGTCAGTGTACAGGTACAGAATTCTAATAATCAACTCCTTCCCCCTGTAAATTCGGATTGCAGAGACGTCAAAGAGAGATCACCAGACGATCTTTCTAATGTTTCAACTTCTGTTCAAGAAGTTGCCTCCACAAAAGAAGTATTATGCGTGGTAGGTGGGACCTCTTCAACTAGGACCTGTAGCTTTCCTTTTCCAAAGCAAGGCAATGTTGAAGGAAGACCAgatgttttgaatttaaatgacTTATCCAAAAAGGAGAAGCAGGAGCAAAATATCAATGGCCCTAGTGAGAAACAAGGAGTATTGGAGATCTCCTCAATGTCCACAATGCCAGAGCCTGAACCTGGACCCGCTCCTATGGGTGCTAGTGAAGAAAAAGCATTTGAGTCTGTTAAAGAACCTGTTTCACCACATAAAGTTGAAAACGATGAGGATATGACTGGGGTGGATGATATTAGAGATGTAAATCCCAGCAGTGCACAACTTCTCAAGACTGCAGGAAAGGATGAGAACTGTCATTCTGATGCTTTGCAGGATCTATCTGTCAGTGGTAATGACTTGGGAAAGCCTGAGGTTTTAGAGTCATCTTTTTCAAGAACAGAGTATGTCAGAGCAGTAAAGGAAGTCAAGGGGCATGTCAGTAATGAAGGGAAGGACATATCAAATGGTTCTGATTCGTTTAAACCAGGGAAAGTTCGCAGAAATCCTAATATGATTGATAAAAAGAGCTCTGACATTGAATTAGAGTATGGCATAGTGGATGCTTTAGAAGTTGCCCGAAAAGTAGCTCAGGAAGTTGAGAGAGAAGTGGGTGATTATAGAGAAACATTCTGCAGCTCTTCTTCAGAGAAAATCTCAGAAGGTGGAATCAGGCAACCTGGAAGCCCGGATTCTATAGATAAAGAGGATGCAGTCACTTCTGTCCCACCAATGGAGGTCCCGTCCAGACAAAGCAATTCTGCTGACACATATCCCGAGGAGGAAGGACATGCAAGTATTTCAGACAATACTGAGGATGAGCCAGATTGTATACCTGAAGTGGAGTCCTCGCAAGTGACTGAAGCAGCACAAGAACCTGGAGGTAATTCGGAGAAGAGCCTCTGTATCTTCGATCTCAATGAAGAAGTTGGTTCTGATGATTTGGATGTTTCTGTAAATCCTTTGTCTATGCCAATACCTATTGTCTCTGCTTCAAAGCCTGTAGCAACTTCTGGGTTGCCTGTGGCCCCTTTGCATTTTGAGGGGACACTTGGATGGAAAGGATCTGCTGCCACAAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCTGATAGTGAGAAGAATCTTTCTGTTAGTGGGAATTCTGATATTTCAAAACAGAGGAAGGATTGTCTTGATTTTGATCTTAATGTGATCGAGGGTGAAGATGGATCAGGAAAACAAATTGCTGAATTATCTGGCCTCCCATCTGGGCAATCATCAGTGGAACTCAGTCCTAAAAGATCAAGCCGGATCGAATTGGATTTGAACAGCATTGGTGATGACGGTGATACCCAACCTTCAGATCAAAGGATGGAGGGGCATCTCTTTTACAGCAGGAATGGCCATTGGAGCCCATCACCTGCATCATCGTCGTCATCAATGCAGCCTTCTATTAGAAACATTGATTTGAATGACAGGCCACACCTTCAAACTGATTTTGCAGACCAAGGACCCAGTAAGTCTTCTCAAATCATTCATGCATATGGGGCTTCCAAGACCGATGCTCCTGTAATTTCTCTCTTGGGTACCAAGGTGGAAGTCAGTGGAAGAGAATTTGTTCCTCAAACTCTGTCTTTGCCTAATGGCAACTCAGTCGAGCCTGCCGTGGATCTTACTATGTCAAGAGGAGGCGGCATTTTAGGCATGGGTGGGGTATCATACAATCAATCATCTGTTTTGGGGTATAATGGACTGACGCAAATGCCCACTTTGTCTCTTCCGTCAGCCATGTACGGGTCAGGTGGCACAGTTCCATACATGGTAGACTCAAGAGGAACTCCAGTTGTGCCTCAAATTGCAGGATCTTCCTCAACGGTCCTGTCATCTTATTCCCAGCCTCCATTTATCATGAGCATGACCAATGCGCAGCTTAGTTTAAATGGGATGGGCCCTTCACGTCCTAACTTTGACCTTTATTCTGGCTTTATGATTGATGCTGGGAATAGAGATGCATTGACTGCAAGGCAAATTTTCTTTCCCGGACAGAGCAGGGCTTTGGAGGAGGAGCATGTAAGGACCATTCCACAACCCTCCAGTTCTGGGGTCGGTGGGAAAAGGAAGGAACCAGATGGTGGGTGGGAAACTTACCCGTTCAACTACAAACATCCACAACCTCCATGGAAGTA	2999	0.4385	MTLEDFFTLTEMKDGLTSPSRVQELVSVMQKEKDCVVKNAGDTTRQWAAVASTIAATENKDCLDLFIQLDGLWFINRWLTDAQNFVDTKDGFIEESITALLRAVEKLHLDGERSISSGIWVTVRNLLSHQNSRVQDRARVLFDSWRVGGNVDVDPPDKDLVRDNDRSEKVVREEGGSSALNESSSDTGHASGLVGGEKTTSMDSPLPERVVSVQVQNSNNQLLPPVNSDCRDVKERSPDDLSNVSTSVQEVASTKEVLCVVGGTSSTRTCSFPFPKQGNVEGRPDVLNLNDLSKKEKQEQNINGPSEKQGVLEISSMSTMPEPEPGPAPMGASEEKAFESVKEPVSPHKVENDEDMTGVDDIRDVNPSSAQLLKTAGKDENCHSDALQDLSVSGNDLGKPEVLESSFSRTEYVRAVKEVKGHVSNEGKDISNGSDSFKPGKVRRNPNMIDKKSSDIELEYGIVDALEVARKVAQEVEREVGDYRETFCSSSSEKISEGGIRQPGSPDSIDKEDAVTSVPPMEVPSRQSNSADTYPEEEGHASISDNTEDEPDCIPEVESSQVTEAAQEPGGNSEKSLCIFDLNEEVGSDDLDVSVNPLSMPIPIVSASKPVATSGLPVAPLHFEGTLGWKGSAATSAFRPASPRKNSDSEKNLSVSGNSDISKQRKDCLDFDLNVIEGEDGSGKQIAELSGLPSGQSSVELSPKRSSRIELDLNSIGDDGDTQPSDQRMEGHLFYSRNGHWSPSPASSSSSMQPSIRNIDLNDRPHLQTDFADQGPSKSSQIIHAYGASKTDAPVISLLGTKVEVSGREFVPQTLSLPNGNSVEPAVDLTMSRGGGILGMGGVSYNQSSVLGYNGLTQMPTLSLPSAMYGSGGTVPYMVDSRGTPVVPQIAGSSSTVLSSYSQPPFIMSMTNAQLSLNGMGPSRPNFDLYSGFMIDAGNRDALTARQIFFPGQSRALEEEHVRTIPQPSSSGVGGKRKEPDGGWETYPFNYKHPQPPWK	999

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	336	361	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	153	204	-	-
	Bva06g01897	999	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	19	148	IPR035441	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	317	365	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	689	704	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	685	758	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	153	175	-	-
	Bva06g01897	999	PANTHER	TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN	1	999	-	-
	Bva06g01897	999	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	61	146	IPR035441	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	634	661	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	479	578	-	-
	Bva06g01897	999	PANTHER	TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED	1	999	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	521	535	-	-
	Bva06g01897	999	Coils	Coil	466	486	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	639	661	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	424	453	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	740	758	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	959	999	-	-
	Bva06g01897	999	MobiDBLite	consensus disorder prediction	220	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g01897	Bva-Chr6	12939888	12945398	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g01897	-		-	ccaj:109815659	1157.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva06g01897	06	12939888	12945398	Bva06g01897	06	12939888	12945398	ECH