Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0056 ATGGGTTTCTTTAGTACTATATTCGGATTTTTTGGATTTGGAATTGGGATTTTTATTGGTCTTGTTGCTGGTTATTTTCTCTTCATCTATGATCAACCCAATGATGTTAAGGACCCTGAAATTAGGCCATTGGCGGAGGAAGATACAGAAGCTCTGCAACGAATAATTCATGAGATTCCCCTTTGGATAAAAAATCCAGACTCTGATCGAGTTGATTGGTTAAACAAACTTATAGAGTATATGTGGCCATATCTTGATAAGGCAATATGCAATACTGCGAAAAACATTGCAAAACCCATAATTGCTGAGCAGATTCCAAAATATAAAATCGATTCTGTTGAGTTTGAAGTGCTCACATTGGGGTCTCTTCCACCAACTTTTCAAGGAATGAAAGTTTATTTAACCGATGAGAAAGAACTAATTATGGAGCCTTCCATAAAATGGGCCGGAAATCCTAACATTCTTATTGCAGTTAAGGCATTTGGGTTAAAAGCAACTATTCAGGTGGTAGATTTGCAAGTATTTCTCGCACCTCGTATTACTTTGAAGCCTTTGGTTCCATGTTTTCCTTGCTTTGGAAATATTTATGTGTCTATCATGGAAAAGCCACATGTTGACTTTGGACTAAAGGTTATAGGAGCTGATCTCATGTCTATTCCTGGATTGTACAGGTTTGTTCAGGAGTTTATTAAAGAGCAAGTTGCAAATATGTACTTATGGCCCAAAACTTTGGAAGTTCCAATTTTAGATCCAACAAAAGCCTTCAAAAGGCCTGTAGGAATTTTAAATATAAAGGTTATAAAAGCAATGAAGTTGAAGAAGAAAGATCTTCTTGGCGCATCTGATCCTTATGTGAAACTAAAGCTCACCGGAGACAATCTCCCATCGAAAAAGACCACCGTGAAGCACAAAAATTTGAATCCGGAATGGAACGAGGAATTTAGTTTGACAGTTAAAGACCCTGAATCTCAAGCCTTACATATTCATGTTTATGATTGGGAACAGGTTGGAAAACATGACAAGATGGGTATTAATGAAATTCAATTGAAAGAACTGGTTGTGGAAGAGACTAAAGTTTACACTCTTGAGCTTTTGAAAACTATGGATCCTAGTGATACCCAAAATGATAAGTCTCGTGGACAGATTGTTATTGAACTAACATATAAACCTTTCAAAGAAGAAGACTTAGATAAAAGTTTTAATAGAATGGAATCACTTCAAAAAGCACCTGAAGGAACCCCTATAGGTGGAGGTCTTCTTGTAGTTATAGTCCATGAAGGTCAAGACATTGAAGGAAAATACCATACAAATCCACATGTAAGACTTATTTTCAAAGGAGAAGAGAGAAAGACTAAGAGCATGAAAAAAAGTAGAGATCCAAGATGGGAAGACGAGTTTCAATTTATGGTCGAGGAACCTCCCACTAATGACAAATTACACGTGGAAGTTGTCAGCACTTCATCACGAAACTTGTTGCGTCCAAAGGAGTCATTGGGTTACATTGACATCTCTCTTGCCGATGTTATTTCTAACAAGAGAATCAATGAGAAGTATCATCTTATAGACTCTAAGAATGGCCGCATTCAAATAGAGATACAATGGCTAGCCTCAAAAGCTACTTGA 1623 0.3691 MGFFSTIFGFFGFGIGIFIGLVAGYFLFIYDQPNDVKDPEIRPLAEEDTEALQRIIHEIPLWIKNPDSDRVDWLNKLIEYMWPYLDKAICNTAKNIAKPIIAEQIPKYKIDSVEFEVLTLGSLPPTFQGMKVYLTDEKELIMEPSIKWAGNPNILIAVKAFGLKATIQVVDLQVFLAPRITLKPLVPCFPCFGNIYVSIMEKPHVDFGLKVIGADLMSIPGLYRFVQEFIKEQVANMYLWPKTLEVPILDPTKAFKRPVGILNIKVIKAMKLKKKDLLGASDPYVKLKLTGDNLPSKKTTVKHKNLNPEWNEEFSLTVKDPESQALHIHVYDWEQVGKHDKMGINEIQLKELVVEETKVYTLELLKTMDPSDTQNDKSRGQIVIELTYKPFKEEDLDKSFNRMESLQKAPEGTPIGGGLLVVIVHEGQDIEGKYHTNPHVRLIFKGEERKTKSMKKSRDPRWEDEFQFMVEEPPTNDKLHVEVVSTSSRNLLRPKESLGYIDISLADVISNKRINEKYHLIDSKNGRIQIEIQWLASKAT* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0056 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 535 - -
Psa5g0056 540 Pfam C2 domain 260 354 IPR000008 -
Psa5g0056 540 Pfam C2 domain 419 520 IPR000008 -
Psa5g0056 540 CDD C2 262 352 - -
Psa5g0056 540 Gene3D C2 domain 419 536 IPR035892 -
Psa5g0056 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 535 IPR045050 GO:0008289
Psa5g0056 540 SMART C2_3c 419 517 IPR000008 -
Psa5g0056 540 SMART C2_3c 261 361 IPR000008 -
Psa5g0056 540 ProSiteProfiles C2 domain profile. 402 518 IPR000008 -
Psa5g0056 540 PRINTS C2 domain signature 277 289 IPR000008 -
Psa5g0056 540 PRINTS C2 domain signature 304 317 IPR000008 -
Psa5g0056 540 PRINTS C2 domain signature 326 334 IPR000008 -
Psa5g0056 540 Gene3D C2 domain 255 411 IPR035892 -
Psa5g0056 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Psa5g0056 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Psa5g0056 540 ProSiteProfiles C2 domain profile. 240 364 IPR000008 -
Psa5g0056 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Psa5g0056 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0056 Psa-Chr5 2720135 2723683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0056 258 516 Lipid Metabolism Gene Families AT3G61300 26.103 5.06e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0056 - - cam:101497090 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0056 5 2720135 2723683 Psa5g0056 5 2720135 2723683 ECH