Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0728 ATGAGTATTTTAAGTACTATAGCTAGTTTTTTAGGATTTGGAATTGGAACTTCACTTGGATTGCTGATAGGATACTTTATGTTTATATACTTTGAATCAATAGATGTCAAGGATCCTACATTTACTCCTTTGGTTGAGCAAGAAGCTAAAACTGTGCAACAATTGCTTCCAGAAATACCCTTATGGATAAAAAATCCAGACTATGACCGTCTTGATTGGCTTAATAAATTTGTTGAGTGTATGTGGCCTTATTTGAACAAGGCAATTTGCAAGACTACAAGAACTATAGCAAAGCCTATTATTGCGGAACAAATTCCAAAGTATAAAATTGATTCAGTTGAATTTGAAGAACTTAATTTGGGCTCTTTGCCACCAACTTTTCAAGGAATGAAAGTGTATAGCACTGATGAAAAGGAATTGATTATGGAACTATCAATGAAATGGGCTGGGAATCCTAACATTATAGTTGCAGTTAAAGCATTTGGATTGCGAGCAACCGTTCAGGTTGTTGATTTGCAAGTGTTTGCTTCTCCGCGCATAATGTTGAAGCCTTTGGTTCCTAGTTTTCCTTGTTTCGCCAATATTTACGTGTCTCTCATGGAAAAGCCACATGTTGATTTTGGATTAAAACTACTTGGAGCTGATGCAATGTCTATTCCTGGTCTTTACAGGATTGTCCAGGAAATTATAAAAGATCAGGTTGCAAAAATGTATCTGTGGCCTAAGGCTTTACAGGTGCAAATAATGGATCCATCACAGGCCATGAAAAAACCAGTTGGAATTCTTCATGTGAAGATTCTGAAAGCAGTGAAGCTTAGAAAGAAAGATATAATGGGAGGAGCAGACCCTTATGTGAAACTTAAACTCAAAGATGATAAACTTGCTTCAAAGAAAACAACTGTGAAATACAAGAACTTGAATCCAGAATGGAATGAAGAATTTAATGTGGTGATTAAAGATCCAGAATCTCAAGACTTAATGCTTAATGTTTATGATTGGGAACAGTTTGGAAAGGCTGAGAAGATGGGTATGAATGTAATTCCATTGAAAGAGCTTACACCAAATGAACCAAAACTACTTACTCTTAAATTACTCAAGACACTTGTACCTAATGATCCTGAGAATGAGAAGTCGCGTGGAGAGCTCATTGTGGAAGTTATGTACAAACCTTTTAAGGATGATGAAGTATCTAAAAATTCAGAAGACACAGAAAAGGCTCCGGAAGGAACACCTGCTAGTGGTGGTTTGCTTTTGATTAGCATCCATGAAGCTGAAGATGTTGAAGGAAAACACCACACAAATCCGTTTGCGCGGCTTATTTTTAAAGGCGAGGAAAGAAAAACCAAGCATGTAAGGAAAAATAGAGATCCAAGATGGGGTGAAACATTTCAATTTACACTAGAGGAACCCCCCATCAATGAGAGGCTTTATGTTGAAGTGATAAGTGCATCCTCAAAGTTAGGCCTGCTGCATCCAAAGGAAACTCTTGGATATGTGGATATAAATTTATCTGATGTGGTTAGCAACAAAAGAATCAATGAGAAGTATCATCTTATTGACTCCAAAAATGGAAAGATTCAAATTGAGCTTCAGTGGAGAACCCCATAA 1608 0.3682 MSILSTIASFLGFGIGTSLGLLIGYFMFIYFESIDVKDPTFTPLVEQEAKTVQQLLPEIPLWIKNPDYDRLDWLNKFVECMWPYLNKAICKTTRTIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYSTDEKELIMELSMKWAGNPNIIVAVKAFGLRATVQVVDLQVFASPRIMLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVAKMYLWPKALQVQIMDPSQAMKKPVGILHVKILKAVKLRKKDIMGGADPYVKLKLKDDKLASKKTTVKYKNLNPEWNEEFNVVIKDPESQDLMLNVYDWEQFGKAEKMGMNVIPLKELTPNEPKLLTLKLLKTLVPNDPENEKSRGELIVEVMYKPFKDDEVSKNSEDTEKAPEGTPASGGLLLISIHEAEDVEGKHHTNPFARLIFKGEERKTKHVRKNRDPRWGETFQFTLEEPPINERLYVEVISASSKLGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0728 535 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Mtr1g0728 535 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 534 IPR045050 GO:0008289
Mtr1g0728 535 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Mtr1g0728 535 SMART C2_3c 416 515 IPR000008 -
Mtr1g0728 535 SMART C2_3c 261 361 IPR000008 -
Mtr1g0728 535 CDD C2 262 352 - -
Mtr1g0728 535 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Mtr1g0728 535 Gene3D C2 domain 255 413 IPR035892 -
Mtr1g0728 535 ProSiteProfiles C2 domain profile. 392 516 IPR000008 -
Mtr1g0728 535 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 392 IPR035892 -
Mtr1g0728 535 CDD C2 417 519 - -
Mtr1g0728 535 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 415 533 IPR035892 -
Mtr1g0728 535 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 534 - -
Mtr1g0728 535 PRINTS C2 domain signature 277 289 IPR000008 -
Mtr1g0728 535 PRINTS C2 domain signature 304 317 IPR000008 -
Mtr1g0728 535 PRINTS C2 domain signature 326 334 IPR000008 -
Mtr1g0728 535 Pfam C2 domain 260 358 IPR000008 -
Mtr1g0728 535 Pfam C2 domain 416 518 IPR000008 -
Mtr1g0728 535 MobiDBLite consensus disorder prediction 394 414 - -
Mtr1g0728 535 Gene3D C2 domain 416 534 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0728 Mtr-Chr1 8240556 8244860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0728 262 470 Lipid Metabolism Gene Families AT1G51570 24.464 1.05e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0728 - - gmx:100778906 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0728 1 8240556 8244860 Mtr1g0728 1 8240556 8244860 ECH