Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0122 ATGAGATTAAAGATAGGTCTTTTCAGTTTCATTACGACTTGTTGTGGATTTGGAATGGGAACTTCACTTGGGGTTGTAATTGGTTGCTATTTATTCTCCTACTTCCGACCAACAGATGTCAAGGATGTCACAATCCGTCCTTTGGTTGAGCAAGATTCTGAAACTTTGCAACGGTTGCTTCCTGAGATGCCCTTGTGGATTAAATATCCAGATTATGATCGTCTTGACTGGCTTAATAAATTTATTGAGATTTTGTGGCCTTATCTGGACAAGGCTATCTGCAAGACTGCAAGGAATATAGCAAAGCCCATAATTGCTGAGAAAATTCCCAGGCACAAAGTTGAAATTCAAACTTTTACCTTGGGCTCTTTACCACCAACATTTCAAGGAATCAAAGTCTATAACACTGATGAAAAGGAGCTGATTATGGAACCATCATTGAAGTGGGCTGGGAATCCTAAcatcttaattaaaattaaagcatTTGGGTTGCGAGCCACAgtccagGTGGTTGACCTCCAAGTGTTTGCTTCTCCACGCATCACTCTCAAGCCTCTAGTTCCAAGCTTTCCATGTTTTTCCAATGTATTTGTGTCTCTCACGGAGAAGCCACATGTTGATTTTGGACTGAAAGTGCTAGGAGCAGATGTAATGTCTATTCCTGGCCTTTATAGGTTTGTGCAGGAGCGTATCAAAGATCAGGTTGCAGAAATGTGTCTGTGGCCCAAGGCCCAAAAGGTGCAAATAATGGATCAAAAAATGGCCATGAAAGTGCCAGTAGGAACAATGCATGTAAAGGTTGTCCGGGCAGTGAAGCTGAGGAAGAAAGACTTAATGGGAGCATCTGACCCTTACGTGAAACTCAAACTGACTGAAGACAAACTTCCTTCAAAGATAACATCGGTGAAATACAGCAACTTGAATCCGGAATGGAATGAAGAATTTAATTTGGTAGTGAAAGACCCTGAGTCTCAAGTCCTACACCTGAGTGTTTATGACTGGGAGcagGTTAGCAAGCATGAAAAGATGGGGATGAACGTGATTCCATTGAAAGAGCTTATCCCTGATGAGCCTAAAGTAGTGACTCTTGATTTACTCAAGACAATGGACCCTAATGATGCCCAGAATGACAAGTCACGTGGGCAGCTCATTGTTGAAGTGTTGTACAAAGCTTTCAAGGATGTTCAGTTTCCAGGGGCAGGGGACGTACAAgtagagatagagaaGGCTCCTGTTGAAACACCTTCTACTGGAGGTGTACTTGTGGTTATGATCCATGGAGCTGAAGACTTGGAAGGAAAACACCACACAAATCCATATGCACGACTCATTTTCAAAGGAGAGGAGAGAAGAACCAAGCGCGTGAAGAAAAACAGAGATCCCCGATGGGAAGAAGCGTTTGAGTTCATGCTGGAGGAACCTCCCATCAATGAGAGGCTTCATGTTGAAGTGCATAGTGCCTCCTCAAAACTGGAATATCTTTTGCATCCCAAGGAAAGTCTGGGCTTCGTGGATATAAATTTATGTGATGCTGTTACCAACAAAAGAATCATTGACAAATATAATCTGATTGACTCAAGAAATGGCCGCATTCAGATTGAGTTACACTGGAGAACTCCCTGA 1623 0.4153 MRLKIGLFSFITTCCGFGMGTSLGVVIGCYLFSYFRPTDVKDVTIRPLVEQDSETLQRLLPEMPLWIKYPDYDRLDWLNKFIEILWPYLDKAICKTARNIAKPIIAEKIPRHKVEIQTFTLGSLPPTFQGIKVYNTDEKELIMEPSLKWAGNPNILIKIKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFSNVFVSLTEKPHVDFGLKVLGADVMSIPGLYRFVQERIKDQVAEMCLWPKAQKVQIMDQKMAMKVPVGTMHVKVVRAVKLRKKDLMGASDPYVKLKLTEDKLPSKITSVKYSNLNPEWNEEFNLVVKDPESQVLHLSVYDWEQVSKHEKMGMNVIPLKELIPDEPKVVTLDLLKTMDPNDAQNDKSRGQLIVEVLYKAFKDVQFPGAGDVQVEIEKAPVETPSTGGVLVVMIHGAEDLEGKHHTNPYARLIFKGEERRTKRVKKNRDPRWEEAFEFMLEEPPINERLHVEVHSASSKLEYLLHPKESLGFVDINLCDAVTNKRIIDKYNLIDSRNGRIQIELHWRTP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0122 540 Pfam C2 domain 420 522 IPR000008 -
Sto5g0122 540 Pfam C2 domain 261 360 IPR000008 -
Sto5g0122 540 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Sto5g0122 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 71 244 IPR039010 -
Sto5g0122 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 419 538 IPR035892 -
Sto5g0122 540 ProSiteProfiles C2 domain profile. 242 363 IPR000008 -
Sto5g0122 540 PRINTS C2 domain signature 278 290 IPR000008 -
Sto5g0122 540 PRINTS C2 domain signature 305 318 IPR000008 -
Sto5g0122 540 PRINTS C2 domain signature 327 335 IPR000008 -
Sto5g0122 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 391 IPR035892 -
Sto5g0122 540 ProSiteProfiles C2 domain profile. 399 521 IPR000008 -
Sto5g0122 540 Gene3D C2 domain 420 539 IPR035892 -
Sto5g0122 540 Gene3D C2 domain 258 398 IPR035892 -
Sto5g0122 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 539 IPR045050 GO:0008289
Sto5g0122 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 5 539 - -
Sto5g0122 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 71 250 IPR031468 GO:0008289
Sto5g0122 540 SMART C2_3c 262 362 IPR000008 -
Sto5g0122 540 SMART C2_3c 420 520 IPR000008 -
Sto5g0122 540 CDD C2 263 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0122 Sto-Chr5 712632 715494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0122 263 526 Lipid Metabolism Gene Families AT3G57880 28.028 5.96e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0122 - - gmx:100778906 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0122 5 712632 715494 Sto5g0122 5 712632 715494 ECH