Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02472 ATGGGAATTTTGAGTACTATTGCAAGCTTTTTTGGATTTGGAGTGGGAACTTCAATTGGGCTAGTCATTGGCTACTATTTGTTCATATACTTCCAGCCAACAGATGTTAAGGATCCAGTAATTCAACCTTTGGTTGAGCAAGATGCTAAAACATTACAACTGTTGCTTCCAGAGATACCCACTTGGATTAAAAACCCAGACTATGACCGTCTCGACTGGCTTAATAAATTTATATTGTATATGTGGCCTTATCTGGACAAGGCAATTTGCAAGACTGCAAGGAGTATAGCAAAGCCCATTATTGCTGAGCAAATTCCGAAGTACAAAATTGATTCAGTTGAATTTGAAGAACTTAGCTTGGGTTCTCTGCCACCAACTTTTCAAGGAATGAAAGTCTATGTGACTGACGAAAAGGAGTTGATTATGGAACCATCAGTGAAGTGGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCATTTGGGCTTCGAGCCACAGTCCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCGCGTATAACTCTGAAGCCTTTGGTTCCAAGTTTTCCATGTTTTGCCAATATTTACATGTCTCTCATGGAGAAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGTCTATTCCTGGCCTTTATAGGATTGTCCAGGAAATCATTAAAGACCAAGTCGCAAACATGTATCTGTGGCCAAAGGCCTTAGAGGTGCAAATAATGGATCCAACAAAGGCCATGAAAGTTCCAGTTGGAATCCTTCATGTGAAAGTTGTGAGGGCAGAGAAGCTTAAAAAGAAAGATCTACTGGGGGCGTCAGACCCTTATGTGAAACTCAAACTCACAGAAGAGAAACTTCCTTCAAAGAAAACAACTGTGAAATACAAGAATTTGAATCCGGAATGGAATGAGGAATTTAATGTAGTCGTCAAAGATCCAGAATCTCAAGTCTTGGAGCTTACAGTTTATGACTGGGAGCAGATTGGCAAGCATGACAAGATGGGTATGAATGTCATTCCACTGAAAGAGATTACACCTGATGAACCTAAAGTGGTGACTCTTAATTTACTCAAGACCATGGACCCTAATGATCCTGAGAATGAGAAGTTGCGCGGGCAGCTAACTGTTGAAGTTCTGTACAAACCTTTTAAGGAGGATGAGTTACCTCAGAGTACAGAAGATTCCAATGCAATAGAAAAGGCTCCTGAAGGAACACCTGCTAGTGGTGGTTTACTTGTAATTATCGTCCATGAAGCTGAAGATGTGGAAGGAAAACACCACACAAATCCATATGTGCGACTGCTATTTAAGGGAGAAGAGAGAAAAACCAAGCATGTCAAGAAAAATAGAGATCCAAGATGGGGTGAGTCGTTTCAATTTATGCTTGAGGAACCGCCAACCAATGAGAGACTATATGTTGAAGTGCAAAGTGCCTCCTCAAAGCTAGGCCTGCTGCATCCTAAGGAAAGTCTGGGTTACGTGGATATAAAATTGTCTGACGTTGTTACCAACAAAAGAATCAACGAGAAATATCATCTCATTGACTCAAGAAATGGACGAATTCAAATTGAGCTTCAGTGGAGAACTCCTTGA 1617 0.4088 MGILSTIASFFGFGVGTSIGLVIGYYLFIYFQPTDVKDPVIQPLVEQDAKTLQLLLPEIPTWIKNPDYDRLDWLNKFILYMWPYLDKAICKTARSIAKPIIAEQIPKYKIDSVEFEELSLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIYMSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVANMYLWPKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTTVKYKNLNPEWNEEFNVVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKVVTLNLLKTMDPNDPENEKLRGQLTVEVLYKPFKEDELPQSTEDSNAIEKAPEGTPASGGLLVIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLYVEVQSASSKLGLLHPKESLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRTP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02472 538 Gene3D C2 domain 257 413 IPR035892 -
Gma17g02472 538 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
Gma17g02472 538 SMART C2_3c 261 361 IPR000008 -
Gma17g02472 538 SMART C2_3c 419 518 IPR000008 -
Gma17g02472 538 Gene3D C2 domain 419 537 IPR035892 -
Gma17g02472 538 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Gma17g02472 538 CDD C2 262 364 - -
Gma17g02472 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Gma17g02472 538 Pfam C2 domain 260 361 IPR000008 -
Gma17g02472 538 Pfam C2 domain 419 521 IPR000008 -
Gma17g02472 538 PRINTS C2 domain signature 277 289 IPR000008 -
Gma17g02472 538 PRINTS C2 domain signature 304 317 IPR000008 -
Gma17g02472 538 PRINTS C2 domain signature 326 334 IPR000008 -
Gma17g02472 538 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Gma17g02472 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Gma17g02472 538 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Gma17g02472 538 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Gma17g02472 538 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02472 Gma-Chr17 42753788 42759643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02472 258 528 Lipid Metabolism Gene Families AT3G61300 26.280 9.87e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02472 - - gmx:100820475 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02472 17 42753788 42759643 Gma17g02472 17 42753788 42759643 ECH