Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1261 ATGCCTATTCTTGATGCTCTGGTAGCACCTATCAAGAAGCTTGTGGGGTTATTACATGTAAAGGTTGTACGGGCACGCAAACTCTTGAAGATGGACATCCTTGGAGCATCCGATCCTTATGTTAAACTCAGTCTAAGTGGGGAGAGGCTTCCAGCAAAGAAAACCTCTATTAAGATGAAGACACTGGACCCTGAGTGGAATGAAGATTTCAAATTGATTGTAAAGGACCCAAAATCTCAAGTCCTACAGTTACATGTCTATGATTGGGAAAAGGTTTAA 279 0.4158 MPILDALVAPIKKLVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLPAKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKV* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1261 92 CDD C2 18 92 - -
Vvi18g1261 92 PRINTS C2 domain signature 33 45 IPR000008 -
Vvi18g1261 92 PRINTS C2 domain signature 60 73 IPR000008 -
Vvi18g1261 92 PRINTS C2 domain signature 82 90 IPR000008 -
Vvi18g1261 92 SMART C2_3c 17 90 IPR000008 -
Vvi18g1261 92 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 91 IPR035892 -
Vvi18g1261 92 Pfam C2 domain 16 91 IPR000008 -
Vvi18g1261 92 Gene3D C2 domain 12 92 IPR035892 -
Vvi18g1261 92 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 12 92 IPR045050 GO:0008289
Vvi18g1261 92 FunFam Os01g0819200 protein 7 92 - -
Vvi18g1261 92 ProSiteProfiles C2 domain profile. 1 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1261 Vvi-Chr18 12634521 12635111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1261 16 88 Acyl Lipid Metabolism Gene Families AT4G13550 34.247 2.72e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1261 - - vvi:109121658 179.489