Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0866 . Acco05g2799 . Accr3g00245 Adu08g00354 Adu06g03197 Aed11g0201 . Aev08g0345 Aev07g0845 Ahy17g2512 Ahy16g3545 Aip07g02691 Aip06g03802 . Alju07g2750 Amo17g2391 Amo16g3853 Apr9g0430 . Arst8g00425 Arst6g04131 . Bach3g02250 . Bisa05g0838 . Bva10g00724 Car04g03443 . Cca05g00179 Cca07g00441 . Dere05g2590 Dod08g2083 Dod08g2083 . Enph7g1348 . Glsi10g0327 Gma04g00363 . Gma14g00719 Gma17g02322 Gso4g0338 . Gso4g0338 Gso4g0338 . . . . . . . . . . . . . . . Lasa6g00096 . . . . Lele25g0208 Lele26g0219 Lele27g1877 Lele28g0228 . . Mal1g5783 . . . . Mesa1g00303 . Mibi08g2452 Mtr1g0512 . . . Phco7g00449 Phco2g00255 . Prci2g0337 . . . Pste8g01007 Pte3g01318 . Pte3g01318 . . Pumo9g00252 Pvu9g0667 Pvu1g0223 . Rops9g02225 . Seca8g03702 Spst9g00452 Spst8g02154 Ssu5g0240 . Sto5g1192 . . . . Trre1g00328 Tsu01g00402 . Vian4g02255 Vian7g00730 . Vifa3g04923 Vimu10g03311 . Viun9g03484 Viun8g00322 Vivi4g05626 Vivi4g05625 Vra6g1866 Vra5g1515
Vvi18g0867 . . . . Adu08g00353 . . . Aev08g0344 . Ahy17g2511 . Aip07g02690 . . . Amo17g2390 . . Apr5g1524 Arst8g00424 . . . . . . Bva10g00725 . Car05g02742 . Cca07g00440 . . . . . . . . Gma04g00362 Gma06g00352 . . Gso4g0337 Gso4g0337 . . . Lal17g0130 . . . . . . . . . . Lapu9g02157 . Lasa5g03711 . . . . . . . . . Lja1g4165 . . Mal2g1205 Mepo3g07133 . Mesa9g04670 . . . . Mtr3g3639 . . Phco7g00448 . . . . . Pste2g01008 . . Pte1g02543 . . . . Pvu9g0666 . Rops10g01080 . Seca4g01491 . Spst9g00451 . . . Sto5g1193 . . Tpr3g3462 Trre5g04822 . . Tsu07g00960 Vian4g02256 . Vifa2g03596 . Vimu10g03312 . Viun9g03486 . Vivi3g01929 . . Vra5g1516
Vvi18g0868 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0869 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0875 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g0866 Chr18 8883524 8885782 -
Acco Acco05g2799 Chr05 43141556 43147519 -
Accr Accr3g00245 Chr3 2604149 2608086 +
Adu Adu08g00354 Chr08 6230717 6234456 +
Adu Adu06g03197 Chr06 110310450 110315939 -
Aed Aed11g0201 Chr11 1620540 1624131 +
Aev Aev08g0345 Chr08 1853312 1856426 +
Aev Aev07g0845 Chr07 5724092 5729586 +
Ahy Ahy17g2512 Chr17 119586191 119590908 +
Ahy Ahy16g3545 Chr16 153011462 153017215 -
Aip Aip07g02691 Chr07 111013991 111018178 +
Aip Aip06g03802 Chr06 135767277 135772783 -
Alju Alju07g2750 Chr07 52955101 52960041 -
Amo Amo17g2391 Chr17 119832093 119836304 +
Amo Amo16g3853 Chr16 150339025 150344509 -
Apr Apr9g0430 Chr9 6003161 6008283 -
Arst Arst8g00425 Chr8 6203276 6207091 +
Arst Arst6g04131 Chr6 109418214 109423792 -
Bach Bach3g02250 Chr3 29361352 29364232 -
Bisa Bisa05g0838 Chr05 14014954 14019803 +
Bva Bva10g00724 Chr10 5971458 5974640 -
Car Car04g03443 Chr04 63113670 63117038 -
Cca Cca05g00179 Chr05 4047311 4054542 -
Cca Cca07g00441 Chr07 5843089 5846148 +
Dere Dere05g2590 Chr05 36478902 36483654 -
Dod Dod08g2083 Chr08 48312460 48318589 -
Dod Dod08g2083 Chr08 48312460 48318589 -
Enph Enph7g1348 Chr7 18931133 18936010 -
Glsi Glsi10g0327 Chr10 2134340 2138032 +
Gma Gma04g00363 Chr04 3103835 3108152 +
Gma Gma14g00719 Chr14 7169068 7178734 +
Gma Gma17g02322 Chr17 41236469 41242501 -
Gso Gso4g0338 Chr4 3040726 3045927 +
Gso Gso4g0338 Chr4 3040726 3045927 +
Gso Gso4g0338 Chr4 3040726 3045927 +
Lasa Lasa6g00096 Chr6 3648642 3651093 -
Lele Lele25g0208 Chr25 1240105 1247600 +
Lele Lele26g0219 Chr26 1266385 1273253 +
Lele Lele27g1877 Chr27 23491595 23495325 -
Lele Lele28g0228 Chr28 1322606 1328160 +
Mal Mal1g5783 Chr1 135020951 135025549 -
Mesa Mesa1g00303 Chr1 3590451 3593485 +
Mibi Mibi08g2452 Chr08 42303407 42306854 -
Mtr Mtr1g0512 Chr1 5965430 5968444 -
Phco Phco7g00449 Chr7 3212178 3218187 +
Phco Phco2g00255 Chr2 1971838 1976288 +
Prci Prci2g0337 Chr2 2393199 2398042 +
Pste Pste8g01007 Chr8 5283795 5292440 -
Pte Pte3g01318 Chr3 11299165 11301926 -
Pte Pte3g01318 Chr3 11299165 11301926 -
Pumo Pumo9g00252 Chr9 3740443 3741758 +
Pvu Pvu9g0667 Chr9 11127875 11132797 +
Pvu Pvu1g0223 Chr1 1884320 1888744 +
Rops Rops9g02225 Chr9 40741505 40745784 -
Seca Seca8g03702 Chr8 106662784 106666197 -
Spst Spst9g00452 Chr9 3982474 3985870 +
Spst Spst8g02154 Chr8 30757999 30762312 +
Ssu Ssu5g0240 Chr5 5025821 5033084 +
Sto Sto5g1192 Chr5 8040323 8043125 -
Trre Trre1g00328 Chr1 2308772 2312513 +
Tsu Tsu01g00402 Chr01 3352180 3356089 +
Vian Vian4g02255 Chr4 39427637 39431337 -
Vian Vian7g00730 Chr7 15533551 15537336 -
Vifa Vifa3g04923 Chr3 1429348564 1429351635 -
Vimu Vimu10g03311 Chr10 43309150 43312397 -
Viun Viun9g03484 Chr9 40918921 40924585 -
Viun Viun8g00322 Chr8 2061937 2066063 +
Vivi Vivi4g05626 Chr4 192059354 192062473 -
Vivi Vivi4g05625 Chr4 192059354 192062700 -
Vra Vra6g1866 Chr6 35285848 35289921 -
Vra Vra5g1515 Chr5 21813382 21818689 -
Vvi Vvi18g0867 Chr18 8887810 8899242 -
Adu Adu08g00353 Chr08 6226566 6228936 +
Aev Aev08g0344 Chr08 1849384 1852804 +
Ahy Ahy17g2511 Chr17 119580288 119583319 +
Aip Aip07g02690 Chr07 111003214 111008506 +
Amo Amo17g2390 Chr17 119826106 119829153 +
Apr Apr5g1524 Chr5 19160972 19165745 -
Arst Arst8g00424 Chr8 6199031 6201937 +
Bva Bva10g00725 Chr10 5975198 5978292 -
Car Car05g02742 Chr05 72506165 72509438 +
Cca Cca07g00440 Chr07 5838365 5842235 +
Gma Gma04g00362 Chr04 3099443 3102478 +
Gma Gma06g00352 Chr06 3039483 3042549 +
Gso Gso4g0337 Chr4 3037062 3040577 +
Gso Gso4g0337 Chr4 3037062 3040577 +
Lal Lal17g0130 Chr17 807511 812270 -
Lapu Lapu9g02157 Chr9 36330179 36333983 -
Lasa Lasa5g03711 Chr5 589460112 589462892 +
Lja Lja1g4165 Chr1 53060228 53063843 -
Mal Mal2g1205 Chr2 14179666 14182813 -
Mepo Mepo3g07133 Chr3 84982364 84986272 +
Mesa Mesa9g04670 Chr9 80663592 80667582 +
Mtr Mtr3g3639 Chr3 50230220 50234247 +
Phco Phco7g00448 Chr7 3208810 3212082 +
Pste Pste2g01008 Chr2 10718602 10722647 +
Pte Pte1g02543 Chr1 45891977 45896177 -
Pvu Pvu9g0666 Chr9 11123394 11127306 +
Rops Rops10g01080 Chr10 22579997 22584155 +
Seca Seca4g01491 Chr4 24137984 24143098 -
Spst Spst9g00451 Chr9 3977762 3981111 +
Sto Sto5g1193 Chr5 8044478 8047945 -
Tpr Tpr3g3462 Chr3 38169668 38173593 +
Trre Trre5g04822 Chr5 49997959 50000920 +
Tsu Tsu07g00960 Chr07 7908813 7912692 -
Vian Vian4g02256 Chr4 39432682 39435916 -
Vifa Vifa2g03596 Chr2 1043419267 1043421680 +
Vimu Vimu10g03312 Chr10 43314476 43318844 -
Viun Viun9g03486 Chr9 40925278 40928271 -
Vivi Vivi3g01929 Chr3 31683420 31686381 -
Vra Vra5g1516 Chr5 21818853 21822542 -
Vvi Vvi18g0868 Chr18 8900835 8901104 +
Vvi Vvi18g0869 Chr18 8902356 8902634 +
Vvi Vvi18g0870 Chr18 8907758 8908045 +
Vvi Vvi18g0871 Chr18 8933133 8933432 +
Vvi Vvi18g0872 Chr18 8941855 8942139 +
Vvi Vvi18g0873 Chr18 8944758 8945051 +
Vvi Vvi18g0874 Chr18 8948470 8950471 +
Vvi Vvi18g0875 Chr18 8954626 8954895 +
Sto Sto5g1192 Chr5 8040323 8043125 -