Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0875 ATGTGTGCCGTGGTGCCAAGGGGTAAGATCACTGTACTACTAACGGAAGAGCAGATAAGGGGCATTTTCCGAAAATATGACAGAGATGGTGACCGTCGCCTCAGCAAGGCGGAGCTGAAGGAAGCCTTCAAGCATCTTGGTTCGCATTTCCCATGTTGGCGAGCCGCCCGGGCACTCAGCCGTGCTGATGCTAACAAAGATGGGTACATCAGCGAGGAGGAGTTGACCAGTCTCGTTAATTACGCTCTGAAATTTGGTTATAAAGTGTAA 270 0.5037 MCAVVPRGKITVLLTEEQIRGIFRKYDRDGDRRLSKAELKEAFKHLGSHFPCWRAARALSRADANKDGYISEEELTSLVNYALKFGYKV* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0875 89 ProSiteProfiles EF-hand calcium-binding domain profile. 54 85 IPR002048 GO:0005509
Vvi18g0875 89 SMART efh_1 54 82 IPR002048 GO:0005509
Vvi18g0875 89 SMART efh_1 18 46 IPR002048 GO:0005509
Vvi18g0875 89 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Vvi18g0875 89 CDD EFh 18 79 IPR002048 GO:0005509
Vvi18g0875 89 Pfam EF-hand domain pair 16 77 IPR002048 GO:0005509
Vvi18g0875 89 ProSitePatterns EF-hand calcium-binding domain. 27 39 IPR018247 -
Vvi18g0875 89 Gene3D - 6 84 - -
Vvi18g0875 89 SUPERFAMILY EF-hand 15 80 IPR011992 -
Vvi18g0875 89 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0875 Vvi-Chr18 8954626 8954895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0875 1 79 EF-hand Containing Proteins AT3G25600 30.380 9.83e-11 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0875 - - vri:117907554 104.76