Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0870 ATGTTTTCTGTGTTTCCCATTCACTTCCATATTCACAAGAGTGTAACCATACCTATCTCTAGGGAAAAGGTACAACAGATTTTCAAAAAGCATGATGCTAATGGTGATGGTAGTCTAAGCTTGGAGGAGCTTGCAACAGCCTATGGAGAACTAGGTTCAATTATCCCCAATCTGAGAGCTCATCTTTCACTCTTCCATGCAGATACTAATGGGGACGGAAAAATCAACTCCGAGGAGATGGAATCTCTCATCAATTATGCTATGTCTCTAGGATATCGCATTAAGTAA 288 0.4028 MFSVFPIHFHIHKSVTIPISREKVQQIFKKHDANGDGSLSLEELATAYGELGSIIPNLRAHLSLFHADTNGDGKINSEEMESLINYAMSLGYRIK* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0870 95 Pfam EF hand 67 83 IPR002048 GO:0005509
Vvi18g0870 95 SUPERFAMILY EF-hand 8 84 IPR011992 -
Vvi18g0870 95 Gene3D - 18 89 - -
Vvi18g0870 95 SMART efh_1 59 87 IPR002048 GO:0005509
Vvi18g0870 95 SMART efh_1 23 51 IPR002048 GO:0005509
Vvi18g0870 95 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Vvi18g0870 95 ProSiteProfiles EF-hand calcium-binding domain profile. 19 54 IPR002048 GO:0005509
Vvi18g0870 95 ProSiteProfiles EF-hand calcium-binding domain profile. 66 90 IPR002048 GO:0005509
Vvi18g0870 95 Pfam EF-hand domain 24 50 IPR002048 GO:0005509
Vvi18g0870 95 CDD EFh 23 80 IPR002048 GO:0005509
Vvi18g0870 95 ProSitePatterns EF-hand calcium-binding domain. 32 44 IPR018247 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0870 25 79 EF-hand Containing Proteins AT5G17480 43.636 6.29e-08 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0870 K13448 - csin:114270360 81.6481