Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0871 ATGCCTCGTCATTGGAATTACCATTTTCCCACCCCTGAAGACAGCAAGTCCACAAGTGTTCCCTACACTAAGCAGCAGTTAGATGAATTCTTCAAACACCATGACAAAAACGGCGACAAATTGCTGAGCAAGGAAGAGCTGAAAAAGGCCTTCGACGATCTGCAGTCACGTAATCCTGGGTTTAGAGCATGGAGAGCGATGGGCAAAGCTGATACGAATGGAGATCAGCACATCAGCCAGCAGGAGATGGAGGCTCTTCTGAATTATGCTGTGGGAATAAAATATCAGATCAAGGCATAA 300 0.46 MPRHWNYHFPTPEDSKSTSVPYTKQQLDEFFKHHDKNGDKLLSKEELKKAFDDLQSRNPGFRAWRAMGKADTNGDQHISQQEMEALLNYAVGIKYQIKA* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0871 99 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0871 99 ProSitePatterns EF-hand calcium-binding domain. 35 47 IPR018247 -
Vvi18g0871 99 Gene3D - 16 91 - -
Vvi18g0871 99 SUPERFAMILY EF-hand 21 87 IPR011992 -
Vvi18g0871 99 ProSiteProfiles EF-hand calcium-binding domain profile. 22 57 IPR002048 GO:0005509
Vvi18g0871 99 CDD EFh 26 83 IPR002048 GO:0005509
Vvi18g0871 99 Pfam EF-hand domain 27 52 IPR002048 GO:0005509
Vvi18g0871 99 SMART efh_1 26 54 IPR002048 GO:0005509
Vvi18g0871 99 SMART efh_1 62 90 IPR002048 GO:0005509
Vvi18g0871 99 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0871 Vvi-Chr18 8933133 8933432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0871 10 91 EF-hand Containing Proteins AT3G59440 32.927 8.48e-07 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0871 - K13448 vvi:100853574 167.548