Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0872 ATGCCTCGTAATTGGAACCCTTTTGAAGGCAAGTCCACAAGTGTTCCCTACACTAAGCAACAGTTACACGAATTCTTCAAACAACATGACAAAGACGGCGACAAATTGCTGAGCAAGGAAGAGCTGAAAAAGGCCTTCGACGATCTGCAGTCACGTACTCCTGGGTTTAGAGCATGGAGAGCAATGGGCAAAGCTGATGCGGATGGAGATCAGCACATCAGCCAGCAGGAGATGGAGGCTCTTCTGGATTACGCCGTGGGAATAAAATATCCGGTCAAGGCATAA 285 0.4807 MPRNWNPFEGKSTSVPYTKQQLHEFFKQHDKDGDKLLSKEELKKAFDDLQSRTPGFRAWRAMGKADADGDQHISQQEMEALLDYAVGIKYPVKA* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0872 94 ProSitePatterns EF-hand calcium-binding domain. 30 42 IPR018247 -
Vvi18g0872 94 Pfam EF-hand domain pair 20 81 IPR002048 GO:0005509
Vvi18g0872 94 ProSiteProfiles EF-hand calcium-binding domain profile. 17 52 IPR002048 GO:0005509
Vvi18g0872 94 SMART efh_1 21 49 IPR002048 GO:0005509
Vvi18g0872 94 SMART efh_1 57 85 IPR002048 GO:0005509
Vvi18g0872 94 Gene3D - 12 85 - -
Vvi18g0872 94 ProSitePatterns EF-hand calcium-binding domain. 66 78 IPR018247 -
Vvi18g0872 94 SUPERFAMILY EF-hand 16 82 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0872 Vvi-Chr18 8941855 8942139 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0872 - K13448 vvi:100853574 193.356