Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0873 ATGCCTCTTAATTTGAACCCTTTTCCCACCCGTGAAGGCAAGTCCACAAGTGTTCCCTACACTAAGCAACAATTACAGGAATTCTTCAAACAACATGACAAAGACGGCGACAAATTGCTGAGCAAGGTAGAGCTGAAAAAGGCCTTCGACGATCTGCAGTCACGTAATCCTGGGTTTAGAGCATGGAGAGCAATGGGCAAAGCTGATGCGGATGGAGATCAGCACATCAGCCAGCAGGAGATGGAGGCTCTTCTGGATTACGCTGTGGGAATAAAATATCCGTTCAAGGCATAA 294 0.4694 MPLNLNPFPTREGKSTSVPYTKQQLQEFFKQHDKDGDKLLSKVELKKAFDDLQSRNPGFRAWRAMGKADADGDQHISQQEMEALLDYAVGIKYPFKA* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0873 97 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Vvi18g0873 97 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Vvi18g0873 97 SUPERFAMILY EF-hand 19 85 IPR011992 -
Vvi18g0873 97 Gene3D - 14 88 - -
Vvi18g0873 97 Pfam EF-hand domain 24 50 IPR002048 GO:0005509
Vvi18g0873 97 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0873 Vvi-Chr18 8944758 8945051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0873 3 85 EF-hand Containing Proteins AT3G51920 27.711 4.45e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0873 - K02183 vvi:100853574 186.037